View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844_high_23 (Length: 278)

Name: NF0844_high_23
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844_high_23
NF0844_high_23
[»] chr6 (6 HSPs)
chr6 (1-182)||(3510055-3510235)
chr6 (1-182)||(15278063-15278244)
chr6 (7-182)||(24540865-24541039)
chr6 (1-119)||(21441880-21441998)
chr6 (5-98)||(34518372-34518465)
chr6 (1-101)||(34514419-34514519)
[»] scaffold0003 (1 HSPs)
scaffold0003 (5-182)||(10582-10758)
[»] chr7 (13 HSPs)
chr7 (5-182)||(16421870-16422046)
chr7 (5-181)||(12502761-12502936)
chr7 (5-182)||(28393208-28393384)
chr7 (1-173)||(16484189-16484360)
chr7 (5-182)||(11283057-11283233)
chr7 (5-176)||(48186325-48186495)
chr7 (5-183)||(28384291-28384468)
chr7 (9-181)||(12528395-12528566)
chr7 (17-181)||(21267896-21268059)
chr7 (14-182)||(36018169-36018336)
chr7 (5-182)||(26262869-26263045)
chr7 (66-149)||(11283023-11283106)
chr7 (5-53)||(36018203-36018251)
[»] chr8 (5 HSPs)
chr8 (5-182)||(44669104-44669280)
chr8 (5-172)||(5536761-5536927)
chr8 (13-182)||(3896978-3897146)
chr8 (9-182)||(6818768-6818940)
chr8 (5-54)||(6818801-6818850)
[»] chr3 (4 HSPs)
chr3 (5-182)||(19932955-19933131)
chr3 (5-172)||(1311708-1311874)
chr3 (1-182)||(3224959-3225140)
chr3 (5-164)||(11034592-11034750)
[»] chr2 (2 HSPs)
chr2 (5-182)||(29962730-29962906)
chr2 (5-182)||(2039223-2039399)
[»] scaffold0172 (1 HSPs)
scaffold0172 (5-176)||(34319-34489)
[»] chr4 (4 HSPs)
chr4 (7-182)||(15426159-15426333)
chr4 (7-182)||(15419142-15419316)
chr4 (5-182)||(28654106-28654282)
chr4 (6-172)||(52945072-52945238)
[»] chr1 (2 HSPs)
chr1 (5-166)||(18902202-18902362)
chr1 (5-182)||(18153617-18153793)
[»] scaffold0655 (1 HSPs)
scaffold0655 (1-182)||(7772-7952)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 3510235 - 3510055
Alignment:
1 atttgatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcga 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
3510235 atttgatgttcagtaccccaccattgggcattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaactcga 3510136  T
101 tggccagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||| |||| |||||||||||  || ||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
3510135 tggtcagtaccccaccattgggca-tttgtctgagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggtaat 3510055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 15278244 - 15278063
Alignment:
1 atttgatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcga 100  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||    
15278244 atttgatgttcagtactccaccattgggcattatactgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaataactcacaaaactcga 15278145  T
101 -tggccagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
     | |||||||||| |||||||  || ||| ||| ||||||||||||||| |||||||||||||||||| |||||||| |||||    
15278144 tttgccagtgccctaccattgggca-tttgtctaagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggtaat 15278063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 24541039 - 24540865
Alignment:
7 tgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggcca 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||||||| ||    
24541039 tgttcagtaccccaccattgggcattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaaatcataaaaatcgatggtca 24540940  T
107 gtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||||||||||||||  || ||| ||||||||||||||||||| || |||||   ||||||| |||||||| |||||    
24540939 gtgccccaccattgggca-tttgtctgagtcatctaatgcatgaaagtctcttaaaataccccaccgttgggtaat 24540865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 21441998 - 21441880
Alignment:
1 atttgatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcga 100  Q
    |||| |||||||||| |||||  |||||||||||| ||||||||||||||||||||||||| || ||||||||  |||| |||| |||||||||||||||    
21441998 atttaatgttcagtatcccacagttggacattattttgaatcacctaatgcatatgaatcgtcaataccccactattggataataactcctaaaactcga 21441899  T
101 tggccagtgccccaccatt 119  Q
    ||  || | ||||||||||    
21441898 tgttcaataccccaccatt 21441880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 34518372 - 34518465
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactc 98  Q
    ||||||||||||||||||||||||||||||||||||| | | |||| |||||||||| |||||||| ||| ||||| | | |||||||||||||    
34518372 gatgttcagtaccccaccattggacattattctgaattatccaatgtatatgaatcgtcactaccctaccattgggcagtaactcctaaaactc 34518465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 34514419 - 34514519
Alignment:
1 atttgatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcga 100  Q
    |||||||||||||||| |||||||||| ||||  ||||||||| | ||||||||||||| | |||||||| ||| ||||||| | |||||||||||||||    
34514419 atttgatgttcagtactccaccattgggcatttctctgaatcatccaatgcatatgaatggtcactaccctaccattgggtagtaactcctaaaactcga 34514518  T
101 t 101  Q
    |    
34514519 t 34514519  T

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Target: scaffold0003 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 10758 - 10582
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||||     
10758 gatgttcagtaccccaccattgggcattattctgaatcacctaattcatatgaatcgccactatcccaccgttgggtagtaactcctaaaactcgatggt 10659  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
10658 cagtgccccaccattggaca-tttgtctgagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggtaat 10582  T

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Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 16422046 - 16421870
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||||     
16422046 gatgttcagtaccccaccattgggcattattctgaatcacctaattcatatgaatcgccactatcccaccgttgggtagtaactcctaaaactcgatggt 16421947  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
16421946 cagtgccccaccattggaca-tttgtctgagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggtaat 16421870  T

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Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 12502761 - 12502936
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||      
12502761 gatgttcaataccccaccattggacattattctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgtt 12502860  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaa 181  Q
    |||| ||||||| |||  |||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
12502861 cagtaccccaccgttgggcatttt-tctgagtcatctaatgcatgaatgtctccgtaaatacctcaccattgagtaa 12502936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 28393384 - 28393208
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||     
28393384 gatgttcggtaccccaccattggaaattattatgaatcatctaatgcatatgaatcgctactaccccaccgttgggtaataactcctaaaactcgatggt 28393285  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||||||||||||||||  || ||||| ||||||||||||||||| || ||||||||||||||| |||||||| |||||    
28393284 cagtgccccaccattgggca-tttatttgagtcatctaatgcatgaaagtctccgtaaataccccaccgttgggtaat 28393208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 16484360 - 16484189
Alignment:
1 atttgatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcga 100  Q
    |||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||     
16484360 atttgaagttcagtaccccaccattgggcattattctgaatcacctagtgcatatgaatcgccactacctcaccgttgggtagtaactcctaaaactcgg 16484261  T
101 tggccagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccg 173  Q
    ||  ||||||||||||||||  || ||| ||||||||||||||||||| |||||||||||||||||| |||||    
16484260 tgatcagtgccccaccattgggca-tttgtctgagtcatctaatgcatgaatgtctccgtaaataccccaccg 16484189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 11283057 - 11283233
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||      
11283057 gatgttcagtaccccaccattggacattattctgaatcatctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcgatgtt 11283156  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
     ||| ||||||| | |   | ||| ||||||||||||||||||| |||||||||||||||||| |||| ||| |||||    
11283157 tagtaccccaccgtagggta-tttgtctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaat 11283233  T

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Target: chr7; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 48186325 - 48186495
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    |||||||||||||||| |||||| |||| |||||||||| ||||||||||||||||| |||||| ||||| ||||||| | ||||||||||||||||||     
48186325 gatgttcagtaccccatcattgggcatttttctgaatcatctaatgcatatgaatcgtcactacaccaccattgggtagtaactcctaaaactcgatggt 48186424  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttg 176  Q
    ||||||||||||||||  || ||| ||||||||||||||||||| ||| |||||||||||||| ||||||||    
48186425 cagtgccccaccattgggca-tttgtctgagtcatctaatgcatgaatatctccgtaaataccccaccgttg 48186495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 28384468 - 28384291
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| || ||||||||| |||||||| | ||||||||||||||||     
28384468 gatgttcagtaccccaccattgggcattattctgaatgatctaatgcatatgaatcgctaccaccccaccgctgggtaataaatcctaaaactcgatggt 28384369  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaatt 183  Q
    ||||||||||||||||  || ||| ||||||||||||||||||| || || |||||||||||  |||||||| ||||||    
28384368 cagtgccccaccattgggca-tttgtctgagtcatctaatgcatgaaagtatccgtaaatactccaccgttgggtaatt 28384291  T

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Target: chr7; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 12528395 - 12528566
Alignment:
9 ttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggccagt 108  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||  | ||    
12528395 ttcagtaccccaccattggacattattctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcggt 12528494  T
109 gccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaa 181  Q
     ||||||  |||  |||||| ||| ||||||||||||||| |||||||||||||||||| |||| ||| ||||    
12528495 accccactgttgggcatttt-tctaagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaa 12528566  T

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Target: chr7; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 21267896 - 21268059
Alignment:
17 cccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggccagtgccccacc 116  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| | |||||||||||||||||| ||||||| ||||    
21267896 cccaccattgggcattattctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtagtaactcctaaaactcgatggtcagtgccacacc 21267995  T
117 attgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaa 181  Q
     |||  || ||| ||||||||||||||||||| ||| |||||||||||||| |||||||| ||||    
21267996 gttgggca-tttgtctgagtcatctaatgcatgaatatctccgtaaataccccaccgttgggtaa 21268059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 36018336 - 36018169
Alignment:
14 taccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggccagtgcccc 113  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||  |||| ||||    
36018336 taccccaccattggacatttttttgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcagtacccc 36018237  T
114 accattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||| ||| ||| ||| ||||||||||||||||||| |||||||| ||||||||| |||| |||| ||||    
36018236 accgttggaca-tttgtctgagtcatctaatgcatgaatgtctctgtaaataccccaccattgaataat 36018169  T

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Target: chr7; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 26262869 - 26263045
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||      
26262869 gatgttcagtaccccaccattgggcattattttgaatcatctaatgcatatgaatcgtcactatcccaccattgggtaataactcctaaaactcgatgtt 26262968  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    |||| ||||| | |||  || ||| ||||||||||||||||||| |||||||| ||||||||| |||| ||| |||||    
26262969 cagtaccccagcgttgggca-tttgtctgagtcatctaatgcatgaatgtctcggtaaataccccaccattgggtaat 26263045  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 11283023 - 11283106
Alignment:
66 taccccaccgttgggtaatgactcctaaaact-cgatggccagtgccccaccattgaacattttatctgagtcatctaatgcata 149  Q
    ||||||||| ||||||||| || ||||||| | |||||  |||| ||||||||||| ||||| | ||||| ||||||||||||||    
11283023 taccccaccattgggtaataacacctaaaaattcgatgttcagtaccccaccattggacattat-tctgaatcatctaatgcata 11283106  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 36018251 - 36018203
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcat 53  Q
    |||||||||||||||||| |||||||||  ||||| ||| |||||||||    
36018251 gatgttcagtaccccaccgttggacatttgtctgagtcatctaatgcat 36018203  T

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Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 44669280 - 44669104
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||     
44669280 gatgttcagtaccccaccattggacattattctgaatcatcaaatgcatatgaatcgccactaccccaccattgggtagtaactcctaaaactcgatggt 44669181  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||||||||||||||||  || ||| ||||||||||||||||||| |||||||||||||||||| | |||||| |||||    
44669180 cagtgccccaccattgggca-tttgtctgagtcatctaatgcatgaatgtctccgtaaatacccctccgttgggtaat 44669104  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 5536761 - 5536927
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||      
5536761 gatgttcaggaccccaccattgggcatcattctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgtt 5536860  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcacc 172  Q
    |||| |||||||||||  || ||| ||||||||||||||||||| |||||||||||||||||||||||    
5536861 cagtaccccaccattgggca-tttgtctgagtcatctaatgcatgaatgtctccgtaaatacctcacc 5536927  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 3896978 - 3897146
Alignment:
13 gtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggccagtgccc 112  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | |||  ||||||||||| | || || ||    
3896978 gtaccccaccattagacattattctgaatcacgtaatgcatatgaattgccactaccccaccgttgggtagtaacttttaaaactcgattgtcaatgtcc 3897077  T
113 caccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||||||||  || | | ||||||||||||||||||| ||||||||| |||||||| ||| |||| |||||    
3897078 caccattgggca-tctgtctgagtcatctaatgcatgaatgtctccttaaataccccactgttgggtaat 3897146  T

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Target: chr8; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 6818940 - 6818768
Alignment:
9 ttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggccagt 108  Q
    |||||||||||||  |||| | ||||| ||||||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||||  | ||    
6818940 ttcagtaccccactgttgggctttattttgaatcacctaatgcatatgaatcgtcactaccccatcattgggtaataactcctaaaactcgatgttcggt 6818841  T
109 gccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
     ||||||||||| ||||    ||||||||||||||||||||||||||||| |||||||| |||| ||| |||||    
6818840 accccaccattggacatcag-tctgagtcatctaatgcataaatgtctccataaataccccaccattgggtaat 6818768  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 6818850 - 6818801
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcata 54  Q
    ||||||| ||||||||||||||||||| | ||||| ||| ||||||||||    
6818850 gatgttcggtaccccaccattggacatcagtctgagtcatctaatgcata 6818801  T

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Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 19933131 - 19932955
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||     
19933131 gatgttcagtatcccaccattgggcattattctgaatcacctaatgcatatgaattgccactaccccaccgttgagtagtaactcctaaaactcgatggt 19933032  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    |||| |||||||||||  || ||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||    
19933031 cagtaccccaccattgggca-tttgtctgagtcatctaatgcatgaatgtctccgtaaataccccaccgttgggtaat 19932955  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 1311874 - 1311708
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||      
1311874 gatgttcagtaccccaccattgggcattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaactcgatgat 1311775  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcacc 172  Q
    || |||||||||||||  || ||| ||||||||||||||||||| |||||||| ||||||||| ||||    
1311774 caatgccccaccattgggca-tttgtctgagtcatctaatgcatgaatgtctctgtaaataccccacc 1311708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 3225140 - 3224959
Alignment:
1 atttgatgttcagtacccc-accattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcg 99  Q
    |||||||||| |||||||| |||  |||  |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
3225140 atttgatgtttagtacccccaccgatgggtattattctgaatcatctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcg 3225041  T
100 atggccagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    |||| ||||||||| ||||||  || ||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||    
3225040 atggtcagtgccccgccattgggca-tttgtctgagtcatctaatgcatgagtgtctccgtaaataccccaccgttgagtaat 3224959  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 11034592 - 11034750
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||| |||||||||||||||  |||||||||||||| | |||||||||||| ||||||||| |||||||||||||||||      
11034592 gatgttcagtaccccaccattgggcattattctgaatcatttaatgcatatgaattgtcactaccccaccattgggtaataactcctaaaactcgatgtt 11034691  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaat 164  Q
    |||| ||||||| |||  || ||| ||||||||||||||| ||| |||||||| ||||||    
11034692 cagtaccccaccgttgggca-tttgtctgagtcatctaatacatgaatgtctctgtaaat 11034750  T

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Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 29962730 - 29962906
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||||     
29962730 gatgttcagtaccccaccattgggcattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaattcaatggt 29962829  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    |||||||| |||||||  || ||| ||||||||||||||||||| ||||||||| |||||||| |||||||| |||||    
29962830 cagtgccctaccattgggca-tttgtctgagtcatctaatgcatgaatgtctccttaaataccccaccgttgggtaat 29962906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 2039399 - 2039223
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |     
2039399 gatgttcagtaccccaccatttggcattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaactcaatagt 2039300  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||||| ||||||||||  || ||| ||||||||| ||||||||| ||||||||| |||||||| |||||||| |||||    
2039299 cagtgtcccaccattgggca-tttgtctgagtcaactaatgcatgaatgtctccttaaataccccaccgttgggtaat 2039223  T

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Target: scaffold0172 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 176
Target Start/End: Original strand, 34319 - 34489
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||     
34319 gatgttcagtatcccaccattgggcattattctgaatcacctaatgcatatgaatcgccactacccgaccgttgggtagtaactcctaaaactcgatggt 34418  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttg 176  Q
    |||||||||| |||||  || ||| ||||||||||||||||||| ||||||||| |||||||| ||||||||    
34419 cagtgccccatcattgcgca-tttgtctgagtcatctaatgcatgaatgtctccttaaataccccaccgttg 34489  T

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Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 15426333 - 15426159
Alignment:
7 tgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggcca 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||    
15426333 tgttcagtaccccaccattgggcattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaattcctaaaactcgatggtca 15426234  T
107 gtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||||||||||||||  || ||| | ||||||||||||||||| || |||||  |||||||| |||||||| |||||    
15426233 gtgccccaccattgggca-tttgtgtgagtcatctaatgcatgaaagtctctttaaataccccaccgttgggtaat 15426159  T

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Target: chr4; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 15419316 - 15419142
Alignment:
7 tgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggcca 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||||| ||    
15419316 tgttcagtaccccaccattgggcattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcttaaaaatcgatggtca 15419217  T
107 gtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||||||||||||||  || ||| | ||||||||||||||||| || |||||  |||||||| |||||||| |||||    
15419216 gtgccccaccattgggca-tttgtgtgagtcatctaatgcatgaaagtctctttaaataccccaccgttgggtaat 15419142  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 182
Target Start/End: Original strand, 28654106 - 28654282
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||| ||| ||||||||| |||||||||||||||||      
28654106 gatgttcagtaccccaccattggacattattttgaatcatctaatgtatatgaatcgtcactaccctaccattgggtaataactcctaaaactcgatgtt 28654205  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    |||| || |||| ||| ||| ||| ||||||||||||||||||| |||||||||||||||||| |||| ||| |||||    
28654206 cagtacctcaccgttggaca-tttgtctgagtcatctaatgcatgaatgtctccgtaaataccccaccattgggtaat 28654282  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 172
Target Start/End: Complemental strand, 52945238 - 52945072
Alignment:
6 atgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggcc 105  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||  || ||||||| ||||||||||||||||||||||| ||||  |    
52945238 atgttcggtatcccaccattggccattattctgaatcacctaatgcatatgaatcgttaccaccccactgttgggtaatgactcctaaaacttgatgttc 52945139  T
106 agt-gccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcacc 172  Q
    |||  |||||||||||  || ||| ||||||||||||||||||| ||| ||||| |||||||| ||||    
52945138 agtacccccaccattgggca-tttgtctgagtcatctaatgcatgaatatctccataaataccccacc 52945072  T

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Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 18902362 - 18902202
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||||     
18902362 gatgttcagtaccccaccattgggcattattctgaatcacctaatgcatatgaattgccactaccccaccgttcggtagtaactcctaaaactcgatggt 18902263  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatac 166  Q
     ||| |||||||||||  || ||| ||||||||||||||||||| |||||||||||||||||    
18902262 aagtaccccaccattgggca-tttgtctgagtcatctaatgcatgaatgtctccgtaaatac 18902202  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 182
Target Start/End: Complemental strand, 18153793 - 18153617
Alignment:
5 gatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcgatggc 104  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||| |||||||||||||||||      
18153793 gatgttcagtaccccaccattgggcattattctgaatcatctaatgcatatgaatcgtcattaccccaccattgggtaataactcctaaaactcgatgtt 18153694  T
105 cagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    |||| ||||||| |||  || ||| ||||||||||||||||||| | |||||||||||||||| |||| ||| |||||    
18153693 cagtaccccaccgttgggca-tttgtctgagtcatctaatgcatgattgtctccgtaaataccccaccattgggtaat 18153617  T

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Target: scaffold0655 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 7952 - 7772
Alignment:
1 atttgatgttcagtaccccaccattggacattattctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtaatgactcctaaaactcga 100  Q
    |||||||||||||||||| ||| |||| |||||||||||| ||||||||| | |||||| | |||||||| | | ||||||||| |||||||||||||||    
7952 atttgatgttcagtaccctaccgttgggcattattctgaaacacctaatgaaaatgaattgtcactaccctagcattgggtaataactcctaaaactcga 7853  T
101 tggccagtgccccaccattgaacattttatctgagtcatctaatgcataaatgtctccgtaaatacctcaccgttgagtaat 182  Q
    ||  |||| |||||||||||  || ||| | ||||||||||||||||| | | ||||| |||||||| |||| |||| ||||    
7852 tgttcagtaccccaccattgggca-tttgtttgagtcatctaatgcatgactatctccataaataccccaccattgactaat 7772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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