View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844_high_24 (Length: 277)

Name: NF0844_high_24
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844_high_24
NF0844_high_24
[»] chr7 (20 HSPs)
chr7 (1-185)||(28384448-28384632)
chr7 (1-172)||(11282907-11283077)
chr7 (36-185)||(16422079-16422228)
chr7 (1-154)||(26262736-26262889)
chr7 (47-185)||(28393427-28393565)
chr7 (36-185)||(16484389-16484537)
chr7 (2-114)||(21267499-21267611)
chr7 (36-156)||(12528238-12528358)
chr7 (36-156)||(36018335-36018455)
chr7 (36-156)||(48186172-48186292)
chr7 (36-155)||(12502609-12502728)
chr7 (1-56)||(16422026-16422081)
chr7 (1-56)||(16484336-16484391)
chr7 (1-56)||(48186290-48186345)
chr7 (1-56)||(28393364-28393419)
chr7 (4-55)||(12502822-12502872)
chr7 (4-55)||(36018234-36018284)
chr7 (1-39)||(12502743-12502781)
chr7 (5-55)||(12528452-12528501)
chr7 (6-52)||(26262933-26262978)
[»] chr2 (3 HSPs)
chr2 (1-185)||(29962566-29962750)
chr2 (36-185)||(2039432-2039581)
chr2 (1-56)||(2039379-2039434)
[»] chr3 (8 HSPs)
chr3 (7-172)||(3225122-3225286)
chr3 (36-185)||(19933164-19933313)
chr3 (62-185)||(1311895-1312018)
chr3 (1-52)||(11034561-11034612)
chr3 (1-56)||(19933111-19933166)
chr3 (1-52)||(1311854-1311905)
chr3 (62-156)||(11034477-11034571)
chr3 (4-55)||(11034653-11034703)
[»] chr4 (5 HSPs)
chr4 (1-172)||(15426315-15426485)
chr4 (36-172)||(15419351-15419486)
chr4 (1-156)||(28653968-28654126)
chr4 (36-163)||(52945272-52945398)
chr4 (1-56)||(15419298-15419353)
[»] chr1 (3 HSPs)
chr1 (1-185)||(18902342-18902528)
chr1 (1-151)||(18153773-18153923)
chr1 (4-55)||(18153682-18153732)
[»] chr6 (13 HSPs)
chr6 (41-183)||(15278278-15278420)
chr6 (36-172)||(24541074-24541209)
chr6 (36-127)||(3510264-3510355)
chr6 (36-154)||(34518221-34518339)
chr6 (36-156)||(34514271-34514391)
chr6 (1-56)||(3510211-3510266)
chr6 (1-56)||(34518337-34518392)
chr6 (1-56)||(24541021-24541076)
chr6 (1-53)||(15278220-15278272)
chr6 (1-42)||(34514402-34514443)
chr6 (8-56)||(8910433-8910481)
chr6 (36-99)||(8910479-8910541)
chr6 (5-125)||(21441978-21442095)
[»] scaffold0003 (2 HSPs)
scaffold0003 (36-185)||(10791-10940)
scaffold0003 (1-56)||(10738-10793)
[»] chr8 (9 HSPs)
chr8 (42-185)||(44669319-44669462)
chr8 (36-185)||(6818977-6819126)
chr8 (36-185)||(3896786-3896937)
chr8 (44-156)||(5536608-5536720)
chr8 (1-56)||(44669260-44669315)
chr8 (1-56)||(3896935-3896990)
chr8 (1-55)||(5536822-5536875)
chr8 (1-40)||(5536742-5536781)
chr8 (1-55)||(6818830-6818883)
[»] scaffold0172 (2 HSPs)
scaffold0172 (42-185)||(34137-34280)
scaffold0172 (1-40)||(34300-34339)
[»] scaffold0655 (2 HSPs)
scaffold0655 (55-185)||(7999-8129)
scaffold0655 (1-47)||(7834-7879)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 28384448 - 28384632
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatc 100  Q
    ||||||||||||||||||||| |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28384448 aatggtggggtactgaacatcgaatttttaggaggtattgcccaatgttggggtatattgtccaatggtgggacatttggatccgtttagaggtgaaatc 28384547  T
Q  101 cacatcatgagcatttgcatatagactaaccaatagggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |  |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| ||| |||||||||    
T  28384548 cggatcatgagcatttgcatatagactaaccaatagggattaacgcattttagtcaggctgtaacttaaggtgagctgtggtgat 28384632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 11283077 - 11282907
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatc 100  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11283077 aatggtggggtactgaacatcgaatttttaggtgttattacccaatggtggggtatattgtccaatggttggacatttggctccgtttagaggtgaaatc 11282978  T
Q  101 cacatcatgagcatttgcatatagactaaccaatagggattaacggattttagtcatgttgtaacttaaggc 172  Q
    |  |||||||||| ||||||||||||| |||| |||||| ||||  | |||||||| |||||||||||||||    
T  11282977 cggatcatgagca-ttgcatatagactgaccattagggactaacacactttagtcaagttgtaacttaaggc 11282907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 16422079 - 16422228
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||    
T  16422079 tattgcccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatctggatcatgagcatttgcatatagactgaccaata 16422178  T
Q  136 gggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    || ||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  16422179 ggaattaacgcattttagtcaggttgtaacttaagacgaggtgtggtgat 16422228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 26262889 - 26262736
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatc 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26262889 aatggtggggtactgaacatccaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacaattggctccgtttagaggtgaaatc 26262790  T
Q  101 cacatcatgagcatttgcatatagactaaccaatagggattaacggattttagt 154  Q
    |  ||||||||||| | |||||||| | |||| |||||| ||||  ||||||||    
T  26262789 cggatcatgagcatgtacatatagattgaccattagggactaacacattttagt 26262736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 28393427 - 28393565
Alignment:
Q  47 ggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaatagggattaacgg 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |   ||||||||||||||||||||||| |||||||||||||||||     
T  28393427 ggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaatttcgattcatgagcatttgcatatagactgaccaatagggattaacgc 28393526  T
Q  147 attttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  28393527 attttagtcaagttgtaacttaaggtgaggtgtggtgat 28393565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 16484389 - 16484537
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||   |||||||||||| ||||||||||| |||||||    
T  16484389 tattgcccaatggtggggtatattgtccaatgatgggacatttggctccgtttagaggcgaaatcgg-atcatgagcattggcatatagactcaccaata 16484487  T
Q  136 gggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |||||||||| |||||||||| ||||||||||||||| ||| ||||||||    
T  16484488 gggattaacgcattttagtcaagttgtaacttaaggctaggggtggtgat 16484537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 21267611 - 21267499
Alignment:
Q  2 atggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatcc 101  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21267611 atggtggggtactgaacatcgaatttttaggagttattaccgaatggtggggtatattgtccaatggtgggacaattggctccgtttagaggtgaaatcc 21267512  T
Q  102 acatcatgagcat 114  Q
      |||||||||||    
T  21267511 ggatcatgagcat 21267499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 12528358 - 12528238
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||   || ||||| | |||| ||    
T  12528358 tattgcccaatggtggggtatattgtccaatggtgggacaattggctccgtttagaggtgaaatccggatcatgagcatggacaaatagattgaccatta 12528259  T
Q  136 gggattaacggattttagtca 156  Q
    |||| ||||| ||||||||||    
T  12528258 gggactaacgcattttagtca 12528238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 36018335 - 36018455
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||   |||||| | | |||| ||    
T  36018335 tattgcccaatggtggggtatattgtccaatggtgggacaattggctccgtttagaggtgaaatccggatcatgagcatgcacatatatattgaccatta 36018434  T
Q  136 gggattaacggattttagtca 156  Q
    |||| ||||| ||||||||||    
T  36018435 gggactaacgcattttagtca 36018455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 48186292 - 48186172
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||  |||||||||||   |||||||| | |||| ||    
T  48186292 tattgcccaatggtggggtatattttccaatggtgggacaattggctccgtttagaggtgaaatccggatcatgagcatgcacatatagattgaccatta 48186193  T
Q  136 gggattaacggattttagtca 156  Q
    |||| ||| | ||||||||||    
T  48186192 gggactaatgcattttagtca 48186172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 12502728 - 12502609
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||  |||||||||||   || ||||| | |||| ||    
T  12502728 tattgcccaatggtggggtatattgtccaatggtgggacaattggctccgtttagaggttaaatccggatcatgagcatggacaaatagattgaccatta 12502629  T
Q  136 gggattaacggattttagtc 155  Q
    |||  ||||| |||||||||    
T  12502628 ggggctaacgcattttagtc 12502609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16422026 - 16422081
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16422026 aatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggtat 16422081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16484336 - 16484391
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16484336 aatggtggggtactgaacttcaaatttttaggagttattacccaatggtggggtat 16484391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 48186345 - 48186290
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48186345 aatgatggggtactgaacatcgaatttttaggagttattacccaatggtggggtat 48186290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 28393364 - 28393419
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||    
T  28393364 aatggtggggtaccgaacatcgaatttttaggatttattatccaatggtggggtat 28393419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 12502872 - 12502822
Alignment:
Q  4 ggtggggtactgaacatcaaatttttaggagttattacccaatggtggggta 55  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  12502872 ggtggggtactgaacatcgagtttt-aggagttattacccaatggtggggta 12502822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 36018234 - 36018284
Alignment:
Q  4 ggtggggtactgaacatcaaatttttaggagttattacccaatggtggggta 55  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  36018234 ggtggggtactgaacatcgagtttt-aggagttattacccaatggtggggta 36018284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12502781 - 12502743
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttatt 39  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  12502781 aatggtggggtattgaacatcgaatttttaggagttatt 12502743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 12528501 - 12528452
Alignment:
Q  5 gtggggtactgaacatcaaatttttaggagttattacccaatggtggggta 55  Q
    ||||||||| ||||||| | |||| ||||||||||||||||||||||||||    
T  12528501 gtggggtaccgaacatcgagtttt-aggagttattacccaatggtggggta 12528452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 26262978 - 26262933
Alignment:
Q  6 tggggtactgaacatcaaatttttaggagttattacccaatggtggg 52  Q
    |||||||||||||||| | |||| |||||||||||||||||||||||    
T  26262978 tggggtactgaacatcgagtttt-aggagttattacccaatggtggg 26262933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 129; Significance: 8e-67; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 29962750 - 29962566
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatc 100  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  29962750 aatggtggggtactgaacatcgaatttttaggagttattatccaatggtcgggtatattgtctaattgtggaacatttggctccgtttagaggtgaaatc 29962651  T
Q  101 cacatcatgagcatttgcatatagactaaccaatagggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |  ||||||| |||||||||||||||| ||||||||| |||||||  ||||||||| ||||||||||||||||||||||||||||    
T  29962650 cggatcatgaacatttgcatatagactgaccaataggaattaacgcgttttagtcaggttgtaacttaaggcgaggtgtggtgat 29962566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 2039432 - 2039581
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||| | |||||    
T  2039432 tattgcccaatggtggggtatattgtccaatggtgggacatttgactccgtttagaggtgaaatccggatcatgagcatttgcatatagactgaacaata 2039531  T
Q  136 gggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    || ||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  2039532 ggaattaacgcattttaatcaggttgtaacttaaggcgaggtgtggtgat 2039581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2039379 - 2039434
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2039379 aatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggtat 2039434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 7 - 172
Target Start/End: Original strand, 3225122 - 3225286
Alignment:
Q  7 ggggtactgaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatc 106  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  3225122 ggggtactaaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccggatc 3225221  T
Q  107 atgagcatttgcatatagactaaccaatagggattaacggattttagtcatgttgtaacttaaggc 172  Q
    ||||||| ||||||||||||| |||| |||||| ||||| |||||||||| |||||||||||||||    
T  3225222 atgagca-ttgcatatagactgaccattagggactaacgcattttagtcaagttgtaacttaaggc 3225286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 19933164 - 19933313
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||| |||||||    
T  19933164 tattgcccaatggtggggtatattgtccaatggcgggacatttggctccgtttagaggtgaaatccggatcatgtgcattggcatatagactgaccaata 19933263  T
Q  136 gggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |||||||||| |||||||||| || |||||||||||| ||| ||||||||    
T  19933264 gggattaacgcattttagtcaagtcgtaacttaaggctaggggtggtgat 19933313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 1311895 - 1312018
Alignment:
Q  62 ccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaatagggattaacggattttagtcatgttg 161  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||  ||||||| |||||||||| ||||    
T  1311895 ccaatggtgggacatttggctccgtttagaggtgaaatccggatcatgagcatttgcatatagactgaccaatagaaattaacgcattttagtcaggttg 1311994  T
Q  162 taacttaaggcgaggtgtggtgat 185  Q
    ||||||||| |||| |||||||||    
T  1311995 taacttaagacgagatgtggtgat 1312018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11034612 - 11034561
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggg 52  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11034612 aatggtggggtactgaacatcgaatttttaggagttattacccaatggtggg 11034561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 19933111 - 19933166
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  19933111 aatggtgggatactgaacatcgaatttttaggagttattacccaatggtggggtat 19933166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1311854 - 1311905
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggg 52  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  1311854 aatggtggggtactgaacatcgaatttttaggggttattacccaatggtggg 1311905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 11034571 - 11034477
Alignment:
Q  62 ccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaatagggattaacggattttagtca 156  Q
    |||||||||||||| ||||||||||||||||||||||| |  ||||||||||    |||||||| | |||| |||||| ||||| ||||||||||    
T  11034571 ccaatggtgggacaattggctccgtttagaggtgaaatacgaatcatgagcacgcacatatagattgaccattagggactaacgcattttagtca 11034477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 11034703 - 11034653
Alignment:
Q  4 ggtggggtactgaacatcaaatttttaggagttattacccaatggtggggta 55  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  11034703 ggtggggtactgaacatcgagtttt-aggagttattacccaatggtggggta 11034653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 15426315 - 15426485
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatc 100  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  15426315 aatggtggggtactgaacaccgaatttttaggagttattacccaatggtggggtatattgttcaatggtgggacatttggctccgtttagaggtgaaatc 15426414  T
Q  101 cacatcatgagcatttgcatatagactaaccaatagggattaacggattttagtcatgttgtaacttaaggc 172  Q
    |  |||||||||| ||||||||||||| |||| |||||| ||||| |||||||||| |||||||||||||||    
T  15426415 cggatcatgagca-ttgcatatagactgaccattagggactaacgcattttagtcaagttgtaacttaaggc 15426485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 15419351 - 15419486
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||| |||| ||    
T  15419351 tattgcccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccggatcatgagca-ttgcatatagactgaccatta 15419449  T
Q  136 gggattaacggattttagtcatgttgtaacttaaggc 172  Q
    |||| ||||| |||||||||| |||||||||||||||    
T  15419450 gggactaacgcattttagtcaagttgtaacttaaggc 15419486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 28654126 - 28653968
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttatta---cccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaa 97  Q
    ||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||    
T  28654126 aatggtggggtactgaacatcgaatttttaggagttattattacccaatggtggggtatattgtccaatggtgggacaattgactctgtttagaggtgaa 28654027  T
Q  98 atccacatcatgagcatttgcatatagactaaccaatagggattaacggattttagtca 156  Q
    |||   |||||||||||   |||||||  | |||| |||||| ||||| ||||||||||    
T  28654026 atctggatcatgagcatgcacatataggttgaccattagggactaacgcattttagtca 28653968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 52945272 - 52945398
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||||||||||| ||||||||||| |||||||    
T  52945272 tattgcccaatggtggggtatattgtccaatggtgggacatttggctccgcatagaggtgaaatccggatcatgagcattggcatatagacttaccaata 52945371  T
Q  136 gggattaacggattttagtcatgttgta 163  Q
     ||||||||| |||||||| | ||||||    
T  52945372 -ggattaacgcattttagttaggttgta 52945398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15419298 - 15419353
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  15419298 aatggtggggtactgaacaccgaatttttaggagttattacccaatggtggggtat 15419353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 18902342 - 18902528
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtata--ttgtccaatggtgggacatttggctccgtttagaggtgaaa 98  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||    
T  18902342 aatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggtatatattgtccaatggtgggacatttggctctgtttagaggtgaaa 18902441  T
Q  99 tccacatcatgagcatttgcatatagactaaccaatagggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |||  |||||| ||||| ||||||||||| ||||||||||||||||| |||||||||| || |||||||||||  ||| ||||||||    
T  18902442 tccggatcatgtgcattggcatatagactgaccaatagggattaacgcattttagtcaagtcgtaacttaaggttaggggtggtgat 18902528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 18153773 - 18153923
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatc 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  18153773 aatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacaattgacttcgtttagaggtgaaatc 18153872  T
Q  101 cacatcatgagcatttgcatatagactaaccaatagggattaacggatttt 151  Q
    |  |||||||||||   |||||||| | |||| |||||| ||||| |||||    
T  18153873 cggatcatgagcatgcacatatagattgaccattagggactaacgcatttt 18153923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 18153682 - 18153732
Alignment:
Q  4 ggtggggtactgaacatcaaatttttaggagttattacccaatggtggggta 55  Q
    |||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  18153682 ggtggggtactgaacatcgagtttt-aggagttattacccaatggtggggta 18153732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 7e-61; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 15278278 - 15278420
Alignment:
Q  41 cccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaatagggat 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||    
T  15278278 cccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccggatcatgagcattttcatatagactgaccaatagggat 15278377  T
Q  141 taacggattttagtcatgttgtaacttaaggcgaggtgtggtg 183  Q
    ||||| |||||||||| ||||||||||||||||||||||||||    
T  15278378 taacgcattttagtcaggttgtaacttaaggcgaggtgtggtg 15278420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 24541074 - 24541209
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| |||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||  |||||||||| ||||||||||||| |||  ||    
T  24541074 tattgcccaatggtggggtattttgttcaatggtgggacatttggctccgtttataggtgaaatccggatcatgagca-ttgcatatagactgaccgtta 24541172  T
Q  136 gggattaacggattttagtcatgttgtaacttaaggc 172  Q
    |||| ||||| |||||||||| |||||||||||||||    
T  24541173 gggactaacgcattttagtcaagttgtaacttaaggc 24541209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 3510264 - 3510355
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagact 127  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  3510264 tattgcccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccggatcatgagcatttgcatatagact 3510355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 34518339 - 34518221
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||   ||| |||| | |||| ||    
T  34518339 tattgcccaatggtggggtatattgtccaatggtgggacaattggctccgtttagtggtgaaatccagattatgagcatgcacatgtagattgaccatta 34518240  T
Q  136 gggattaacggattttagt 154  Q
    |||| ||||| ||||||||    
T  34518239 gggactaacgcattttagt 34518221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 34514391 - 34514271
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||||||||  |||||||||||   |||||||| | |||| ||    
T  34514391 tattgcccaatgatggggtatattgttcaatggtgggacaattggctccgtttagtggtgaaatccggatcatgagcatgcacatatagattgaccatta 34514292  T
Q  136 gggattaacggattttagtca 156  Q
    |||| ||||| ||||||||||    
T  34514291 gggactaacgcattttagtca 34514271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 3510211 - 3510266
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3510211 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 3510266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 34518392 - 34518337
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34518392 aatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggtat 34518337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24541021 - 24541076
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  24541021 aatggtggggtactgaacaccgaatttttaggagttattacccaatggtggggtat 24541076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15278220 - 15278272
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtgggg 53  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  15278220 aatggtggagtactgaacatcaaatttttaggatttattacccaatggtgggg 15278272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34514443 - 34514402
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacc 42  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  34514443 aatggtggagtactgaacatcaaatttttaggagttattacc 34514402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 8910433 - 8910481
Alignment:
Q  8 gggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    |||||||  |||||||||||||| |||||||||||||||||||||||||    
T  8910433 gggtactagacatcaaatttttaagagttattacccaatggtggggtat 8910481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 8910479 - 8910541
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaat 99  Q
    |||||||||||| |||||||||||||| | | ||||||||||| |||||||  |||||||||||    
T  8910479 tattacccaatgatggggtatattgtctagt-gtgggacatttagctccgtagagaggtgaaat 8910541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 21441978 - 21442095
Alignment:
Q  5 gtggggtactgaacatcaaatttttaggagttattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccaca 104  Q
    ||||| |||||||||| ||||||| || ||||| || |||||| || |||||  || |||||||||| ||||||||||| |  |||| |||||  ||  |    
T  21441978 gtgggatactgaacattaaattttaag-agttaatatccaatgctgaggtat--tgcccaatggtggaacatttggctctgcatagatgtgaaggccgga 21442074  T
Q  105 tcatgagcatttgcatataga 125  Q
    ||| |||||||||||||||||    
T  21442075 tcacgagcatttgcatataga 21442095  T

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Target: scaffold0003 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 10791 - 10940
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||    
T  10791 tattgcccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatctggatcatgagcatttgcatatagactgaccaata 10890  T
Q  136 gggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    || ||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  10891 ggaattaacgcattttagtcaggttgtaacttaagacgaggtgtggtgat 10940  T

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Target: scaffold0003; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 10738 - 10793
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10738 aatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggtat 10793  T

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Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 44669319 - 44669462
Alignment:
Q  42 ccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaatagggatt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||    
T  44669319 ccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccggatcatgagcatttgcatatagactgaccaataggaatt 44669418  T
Q  142 aacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |||| |||||||||| ||||||||| ||| ||||||||||||||    
T  44669419 aacgcattttagtcaggttgtaactcaagacgaggtgtggtgat 44669462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 6818977 - 6819126
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaata 135  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||||||||||||||||||||| |||||||    
T  6818977 tattgcccaacggtggggtatattgtccaatggtgggacatttggctctgcttagaggtgaaatccgaatcatgagcatttgcatatagactgaccaata 6819076  T
Q  136 gggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||||    
T  6819077 gggattaacacattttagtcaggttgtaacttaaggtgaggtgtggtgat 6819126  T

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Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 36 - 185
Target Start/End: Complemental strand, 3896937 - 3896786
Alignment:
Q  36 tattacccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcat--ttgcatatagactaaccaa 133  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||   ||||||| |||  ||||| ||||||| |||||    
T  3896937 tattgcccaatggtggggtatattttccaatggtgggatatttgactccgtttagaggtgaaatcaggatcatgaacataattgcacatagactgaccaa 3896838  T
Q  134 tagggattaacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  3896837 taggaattaacgcattttagtcatgttgtaacttaaggcgaggtgtggtgat 3896786  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 5536720 - 5536608
Alignment:
Q  44 aatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaatagggattaa 143  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||   |||||||| | |||| || ||| |||    
T  5536720 aatggtggggtatattgtccaatcgtgggacaattggctccgtttagaggtgaaatccggatcatgagcatgcacatatagattgaccattaaggactaa 5536621  T
Q  144 cggattttagtca 156  Q
    |  ||||||||||    
T  5536620 cacattttagtca 5536608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44669260 - 44669315
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44669260 aatggtggggtactgaacatcgaatttttaggagttattacccaatggtggggtat 44669315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3896990 - 3896935
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggtat 56  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||    
T  3896990 aatggtggggtaccaaacatcgaatttttaggagttattacccaatggtggggtat 3896935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 5536875 - 5536822
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggta 55  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  5536875 aatggtggggtactgaacatcgagtttt-aggagttattacccaatggtggggta 5536822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5536781 - 5536742
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttatta 40  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  5536781 aatggtggggtcctgaacatcgaatttttaggagttatta 5536742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6818830 - 6818883
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatggtggggta 55  Q
    ||||||||||||| ||||||| | |||| |||||||||||||||||| |||||||    
T  6818830 aatggtggggtaccgaacatcgagtttt-aggagttattacccaatgatggggta 6818883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 34280 - 34137
Alignment:
Q  42 ccaatggtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaatagggatt 141  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||| | |||    
T  34280 ccaatcgtggggtatattgtccaatggtgggacatttggctccgtttagaggtgaaatccggatcatgagcatttacatatagactgaccaataagaatt 34181  T
Q  142 aacggattttagtcatgttgtaacttaaggcgaggtgtggtgat 185  Q
    |||| |||||||||| ||||||||||||||||||||||||||||    
T  34180 aacgcattttagtcaggttgtaacttaaggcgaggtgtggtgat 34137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34339 - 34300
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttatta 40  Q
    ||||||||| ||||||||||| ||||||||||||||||||    
T  34339 aatggtgggatactgaacatcgaatttttaggagttatta 34300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 7999 - 8129
Alignment:
Q  55 atattgtccaatggtgggacatttggctccgtttagaggtgaaatccacatcatgagcatttgcatatagactaaccaatagggattaacggattttagt 154  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  7999 atattgtccaatggtcggacatttggctccgcatagaggtgaaatccggatcatgagcatttgcatataaactaaccaatagggattaacgcattttagt 8098  T
Q  155 catgttgtaacttaaggcgaggtgtggtgat 185  Q
    || |||||| |||||||| |||||| |||||    
T  8099 caggttgtatcttaaggctaggtgttgtgat 8129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7834 - 7879
Alignment:
Q  1 aatggtggggtactgaacatcaaatttttaggagttattacccaatg 47  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||    
T  7834 aatggtggggtactgaacatcgagtttt-aggagttattacccaatg 7879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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