View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_high_34 (Length: 251)
Name: NF0844_high_34
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 28183562 - 28183457
Alignment:
| Q |
16 |
atgacataaaaccaactactctccaagtcgtctcggcttgaaacaccctaagtgaaatcaacattataacttgaacaactctgcgagtccgggaaacatc |
115 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
28183562 |
atgacataaaaccaattactctccaagtcgtctcggcttgaaacaccctaagtgagatcaacattataacttgaacaactctgcgagtctgagaaacatc |
28183463 |
T |
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| Q |
116 |
ggaaac |
121 |
Q |
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|||||| |
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| T |
28183462 |
ggaaac |
28183457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 28183460 - 28183369
Alignment:
| Q |
160 |
aaacctgcacgataacaagaacaggtaatttcagtcaggtttataacttaaaaaagatttgagttattatgtttgcgtagaagatgctttca |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| | ||| | |||| ||||||||||||||| |
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| T |
28183460 |
aaacctgcacgataacaagaacaggtaatttcagtcaggtttatttcttcaaaaagatttgaataattgtttttgtttagaagatgctttca |
28183369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 29527144 - 29527223
Alignment:
| Q |
136 |
gagaaacttcaggaatctcaccccaaacctgcacgataacaagaacaggtaatttcagtcaggtttataacttaaaaaag |
215 |
Q |
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| T |
29527144 |
gagaaacttcaggaaccacatccgaaatctgcacgataacaagaactcataatttcagtcagatttatagcttaaaaaag |
29527223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 29529204 - 29529295
Alignment:
| Q |
164 |
ctgcacgataacaagaacaggtaatttcagtcaggt----ttataacttaaaaaagatttgagttattatgtttgcgtagaagatgctttca |
251 |
Q |
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||||||| ||| |||||| ||||||||||||||||| |||||| |||||||| |||| ||| ||| || ||| ||||||||||| |||| |
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| T |
29529204 |
ctgcacggtaataagaacgggtaatttcagtcaggtttaattataatttaaaaaatatttaagtaattgtgcttgtgtagaagatgcgttca |
29529295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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