View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_12 (Length: 498)
Name: NF0844_low_12
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Complemental strand, 33295539 - 33295156
Alignment:
| Q |
13 |
aatataacacattcttcaattagaaaacaaaatctggacttttgttacaagccactaattaacgtgtattcaagatcataacttaagggaataaagtcaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33295539 |
aatataacacattcttcaattagaaaacaaaatctggacttttgttacaagccactaattaacgtgtattcaagatcataacttaagggaataaagtcaa |
33295440 |
T |
|
| Q |
113 |
aaattgactcaccttagcttctcatgcaagccattgatagtggaagatttcaatgtcaataaaataagtaacgccaaaagtattattcacgaatgcactt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33295439 |
aaattgactcaccttagcttctcatgcaagccattgatagtggaagatttcaatgtcaataaaataagtaacgccaaaagtattattcacgaatgcactt |
33295340 |
T |
|
| Q |
213 |
taaaaactcacctgtcagaatttgtgtaaaaggacaaatt-aaaacttaagctaagaaattatgaacaacatcaaagtgaaggaaaaagtatattaaaca |
311 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33295339 |
taaaaactcacctgtcagaatttgtgt-aaaggacaaattaaaaacttaagctaagaaattatgaacaacatcaaagtgaaggaaaaagtatattaaaca |
33295241 |
T |
|
| Q |
312 |
attatactacagctatgcttaccactttctgaaattgatgcttctcatgtgtaagattcgactttataactttgaatgtgactca |
396 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33295240 |
attatattacagctatgcttaccactttctgaaattgatgcttctcatgtgtaagattcgactttataactttgaatgtgactca |
33295156 |
T |
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