View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_14 (Length: 474)
Name: NF0844_low_14
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 39954595 - 39954886
Alignment:
| Q |
9 |
gagatgaaacaaatgtaaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaat |
108 |
Q |
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| T |
39954595 |
gagatgaaacaaatgtaaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaat |
39954694 |
T |
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| Q |
109 |
tcattcattcatcgttaagaattaagatacaagtccaaatactagaaccacagaactaagcattcaaccagatctaagactactaaatttatattaacca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39954695 |
tcattcattcatcgttaagaattaagatacaagtccaaatactagaaccacaggactaagcattcaaccagatctaagactactaaatttatattaacca |
39954794 |
T |
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| Q |
209 |
gatttagaactaaatcgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacac |
300 |
Q |
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| T |
39954795 |
gatttagaactaaatcgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacac |
39954886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 53328904 - 53328861
Alignment:
| Q |
251 |
taaccaccgaaaccgtagagagtccttccctgcctcttgagagc |
294 |
Q |
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| T |
53328904 |
taacccccgaaaccgtaaagagtccttccctgcctcttgagagc |
53328861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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