View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844_low_16 (Length: 464)

Name: NF0844_low_16
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844_low_16
NF0844_low_16
[»] chr6 (13 HSPs)
chr6 (10-426)||(32450119-32450512)
chr6 (58-427)||(23260483-23260829)
chr6 (247-425)||(34636188-34636366)
chr6 (247-426)||(25005144-25005323)
chr6 (23-227)||(10751438-10751634)
chr6 (116-227)||(25005320-25005432)
chr6 (326-425)||(26182602-26182700)
chr6 (119-196)||(34636386-34636457)
chr6 (23-103)||(34636448-34636528)
chr6 (351-426)||(11166587-11166662)
chr6 (261-398)||(24992444-24992578)
chr6 (100-138)||(26182570-26182608)
chr6 (322-427)||(13777247-13777350)
[»] chr1 (7 HSPs)
chr1 (23-427)||(35761919-35762303)
chr1 (24-227)||(37667057-37667252)
chr1 (291-428)||(37667265-37667401)
chr1 (247-424)||(9537427-9537602)
chr1 (259-426)||(16074710-16074879)
chr1 (304-427)||(21264718-21264841)
chr1 (59-163)||(16074943-16075048)
[»] chr3 (14 HSPs)
chr3 (23-426)||(5004598-5004970)
chr3 (247-462)||(46404633-46404849)
chr3 (247-427)||(16975252-16975433)
chr3 (10-180)||(16975453-16975624)
chr3 (323-426)||(16475278-16475381)
chr3 (119-197)||(46404537-46404615)
chr3 (251-339)||(11967965-11968053)
chr3 (23-117)||(11937745-11937839)
chr3 (23-103)||(46404466-46404546)
chr3 (339-426)||(9104174-9104261)
chr3 (322-415)||(17542813-17542904)
chr3 (259-311)||(8730913-8730966)
chr3 (259-311)||(9082800-9082853)
chr3 (125-213)||(11967862-11967951)
[»] scaffold0413 (2 HSPs)
scaffold0413 (119-427)||(8839-9125)
scaffold0413 (23-103)||(9116-9196)
[»] chr7 (13 HSPs)
chr7 (247-425)||(15874008-15874186)
chr7 (257-417)||(21491577-21491739)
chr7 (247-428)||(22077631-22077810)
chr7 (10-224)||(21491350-21491568)
chr7 (265-427)||(18367412-18367577)
chr7 (23-224)||(18367197-18367401)
chr7 (247-426)||(48576332-48576509)
chr7 (119-196)||(15873911-15873988)
chr7 (23-103)||(15873840-15873920)
chr7 (290-426)||(9993291-9993427)
chr7 (285-427)||(48654339-48654479)
chr7 (339-426)||(12196729-12196816)
chr7 (174-227)||(22077807-22077860)
[»] chr5 (7 HSPs)
chr5 (23-445)||(4557839-4558241)
chr5 (265-425)||(536731-536891)
chr5 (247-345)||(536895-536993)
chr5 (119-196)||(537013-537090)
chr5 (23-103)||(537081-537161)
chr5 (339-426)||(27026621-27026708)
chr5 (339-424)||(6308625-6308710)
[»] chr2 (5 HSPs)
chr2 (275-427)||(32735391-32735543)
chr2 (322-426)||(12774954-12775056)
chr2 (267-359)||(29270702-29270792)
chr2 (259-427)||(1193598-1193765)
chr2 (322-426)||(28267692-28267793)
[»] chr4 (5 HSPs)
chr4 (247-426)||(28969254-28969431)
chr4 (10-223)||(49499191-49499406)
chr4 (251-393)||(49499045-49499187)
chr4 (340-426)||(41868570-41868655)
chr4 (174-227)||(28969204-28969257)
[»] scaffold1838 (1 HSPs)
scaffold1838 (247-381)||(221-353)
[»] chr8 (5 HSPs)
chr8 (322-427)||(22816487-22816590)
chr8 (259-359)||(35839168-35839268)
chr8 (339-424)||(40841568-40841652)
chr8 (351-428)||(20264999-20265076)
chr8 (351-428)||(21051628-21051705)
[»] scaffold0120 (1 HSPs)
scaffold0120 (351-426)||(2645-2720)
[»] scaffold0013 (1 HSPs)
scaffold0013 (322-427)||(243170-243275)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 10 - 426
Target Start/End: Original strand, 32450119 - 32450512
Alignment:
Q  10 aataatatactcaccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaact 109  Q
    ||||| |||| ||| |||||| ||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  32450119 aataaaatacccacgactaagacaaactcataggcaaatacagtcagatattaacacatcatcatgcacatgaaccaaaatgaaatattttcataaaact 32450218  T
Q  110 catatttctatattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaataaaataactgt 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||    
T  32450219 catatttctatattttcatttatttagtttatcaacaaagtctaacacttctttaacaataccacaaaaacatatatgcatagaaaaataaaataaatgt 32450318  T
Q  209 cattccacataacattatctatcatacataacattatctatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaatttt 308  Q
    |||||||||                   ||||||||||    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  32450319 cattccaca-------------------taacattatc----atacacacatcatataaaatataattaaactaataacttttataaaaagttaaaattt 32450395  T
Q  309 accatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||| |    
T  32450396 accatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacacaatcctagtacttagtaagaacgtacg 32450495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 58 - 427
Target Start/End: Original strand, 23260483 - 23260829
Alignment:
Q  58 tattaacacatcatcatccacgtgaaccataatgaaatattttcataaaactcatatttctatattttcatttatttagtttatcagcaaagtctaacac 157  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23260483 tattaacacatcatcatccacatgaaccaaactgaaatattttcataaaactcatatttctatattttcatttatttagtttatcagcaaa-tctaacac 23260581  T
Q  158 ttcttta-caataccacaaaaacatatatgaatagaaaaataaaataactgtcattccacataacattatctatcatacataacattatctatcatacag 256  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||                   ||||||||||    |||||     
T  23260582 ttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccaca-------------------taacattatc----atacaa 23260658  T
Q  257 acatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaag 356  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23260659 acatcatataaaatataattaaactaataacttttataaaaggctaaattttaccatatgaattcatattttagttgttttgttcttttcaagagacaag 23260758  T
Q  357 aatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacctc 427  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  23260759 aatctctacctctaattcataacataatcctaatacttagtaagaacgtatggggaaaaagcccttacctc 23260829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 247 - 425
Target Start/End: Complemental strand, 34636366 - 34636188
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636366 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 34636267  T
Q  347 aacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacc 425  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  34636266 aacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 34636188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 247 - 426
Target Start/End: Complemental strand, 25005323 - 25005144
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25005323 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcttattttagttgttttgttcttttc 25005224  T
Q  347 aacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||| ||||| |||||||||||||| | |||||||    
T  25005223 aacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactcttacct 25005144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 10751438 - 10751634
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaactcatatttctatat 122  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| || |||| | |||||||||||| |||||||| ||||           
T  10751438 ccactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtatt------- 10751530  T
Q  123 tttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataactgtcattccacataaca 222  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10751531 -ttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccacataaca 10751629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 25005432 - 25005320
Alignment:
Q  116 tctatattttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaataaaataactgtcattcc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25005432 tctatattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattcc 25005333  T
Q  215 acataacattatc 227  Q
    |||||| ||||||    
T  25005332 acataaaattatc 25005320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 26182602 - 26182700
Alignment:
Q  326 tttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacc 425  Q
    |||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||| || |  | |||||||||||||||||||||    
T  26182602 tttagttgtttt-ttcttctcaacatacaagaatctctaactctaattcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc 26182700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 34636457 - 34636386
Alignment:
Q  119 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa 196  Q
    |||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||    
T  34636457 atattttcatttatttagtttatcagcaaagtctaacactt------aataccacaaaaacatatatgaatagaaaaa 34636386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 34636528 - 34636448
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcat 103  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| || |||| | ||||||||||||||    
T  34636528 ccactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcat 34636448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 11166587 - 11166662
Alignment:
Q  351 gacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
    ||||| |||||||||| ||| ||||||| |  ||||||| ||||| ||||| ||||||||||||||||||||||||    
T  11166587 gacaaaaatctctaccactatttcataataagatcctaacacttagtaagaacgtatggggaaaaagcccttacct 11166662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 398
Target Start/End: Complemental strand, 24992578 - 24992444
Alignment:
Q  261 catataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatc 360  Q
    |||||||||  |||||||| |||| | |||||||||||  ||||||||||||  | ||   |||||||| ||||||  |||||||||| | ||||||||     
T  24992578 catataaaacttaattaaaataatcagttttataaaagaataaattttaccacgtaaagaaatattttaattgttt--ttcttttcaa-aaacaagaatt 24992482  T
Q  361 tctacctctaattcataacataatcctaatacttaata 398  Q
    ||||| | ||||||||||||||  |||| |||||||||    
T  24992481 tctacttataattcataacatatccctagtacttaata 24992444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 26182570 - 26182608
Alignment:
Q  100 tcataaaactcatatttctatattttcatttatttagtt 138  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  26182570 tcatagaactcatatttctatattttcatttatttagtt 26182608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 427
Target Start/End: Original strand, 13777247 - 13777350
Alignment:
Q  322 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagccct 421  Q
    |||||||||||||||  |||||| ||| ||| |||||| | ||| ||||||||| ||||| |||||| || ||| || |  |||| |||||||||| |||    
T  13777247 atattttagttgttt--ttctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtatttattatggacgtacggggaaaaagtcct 13777344  T
Q  422 tacctc 427  Q
    ||||||    
T  13777345 tacctc 13777350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 23 - 427
Target Start/End: Original strand, 35761919 - 35762303
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaactcatatttctatat 122  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||    
T  35761919 ccactaaggcaaactcataggcaaatacagtcaaatattaacacatcatcatccacatgaaccaaaatgaaatattttcataaaacacatatttctatat 35762018  T
Q  123 tttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaacatatatgaatagaaaaataaaataactgtcattccacataac 221  Q
    ||||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||        
T  35762019 tttcatttatttagtttatctacaaagtctaacacttcattaacaataccacaaaaacatatatgcatagaaaaataaaataaatgtcattccaca---- 35762114  T
Q  222 attatctatcatacataacattatctatcatacagacatcatataaaatataattaaactaataactttt--ataaaaggttaaattttaccatatgaat 319  Q
                   ||||||||||    ||||| ||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||| |||    
T  35762115 ---------------taacattatc----atacacacatcatataaaatatagttaaactaataacttttttataaaaggttaaattttaccatataaat 35762195  T
Q  320 tcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcc 419  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |  |||||||||||||||||    
T  35762196 tcatattttagttgttttgttcttttcaacatacaagaatctctacctctaattcataacataatcctagtacttagtatggacgtatggggaaaaagcc 35762295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 37667057 - 37667252
Alignment:
Q  24 cactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaactcatatttctatatt 123  Q
    ||||||||||||||||||| ||||| |||||| || ||||||||||||||||||| || |||| | |||||||||||||||||||||||||        |    
T  37667057 cactaaggcaaactcatagacaaatacagtcagattttaacacatcatcatccacatggaccaaactgaaatattttcataaaactcatat--------t 37667148  T
Q  124 ttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataactgtcattccacataacat 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  37667149 ttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaaagtcattccacataacat 37667248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 291 - 428
Target Start/End: Original strand, 37667265 - 37667401
Alignment:
Q  291 tataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaat 390  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37667265 tataaaaggttaaattttatcatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctatt 37667364  T
Q  391 acttaataagaccgtatggggaaaaagcccttacctca 428  Q
    ||||| ||||| ||||||||||||||| ||||||||||    
T  37667365 acttagtaagaacgtatggggaaaaag-ccttacctca 37667401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 247 - 424
Target Start/End: Original strand, 9537427 - 9537602
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 346  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||  ||||| ||    
T  9537427 tatcatacaaacatcatataaaatataattaaactaataacttttataaaaggttaaattttacaatataaatttatattttacttgttt--ttcttctc 9537524  T
Q  347 aacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttac 424  Q
    ||||||||||||||| ||||||||||||||||||| |||||| |||| | || |  |||||| || ||||||||||||    
T  9537525 aacagacaagaatctatacctctaattcataacatcatcctagtactcagtatggacgtatgaggtaaaagcccttac 9537602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 259 - 426
Target Start/End: Complemental strand, 16074879 - 16074710
Alignment:
Q  259 atcatataaaatataattaaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaaga 357  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||  ||||||| ||| ||||| |    
T  16074879 atcatataaaatataattaaatctaataacttttataaaagattaaattttaacatatgaattcatattttaattgttt--ttctttttaacggacaaaa 16074782  T
Q  358 atctctacctctaattcataa---cataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
    ||||||| |||||||||||||   ||| |||| | |||||| || || |||||||| |||||||||||||||    
T  16074781 atctctatctctaattcataatatcatcatcccagtacttagtatgaacgtatgggaaaaaagcccttacct 16074710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 21264718 - 21264841
Alignment:
Q  304 attttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagacc 403  Q
    |||||||||| | |||  |||||||| ||||||| |||||||||| ||||||||||  ||||| ||  || || ||| |  ||||  ||||| ||||| |    
T  21264718 attttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaattgctacccctgtttaatcacaaagccctagcacttagtaagaac 21264817  T
Q  404 gtatggggaaaaagcccttacctc 427  Q
    ||||||||||||||||||||||||    
T  21264818 gtatggggaaaaagcccttacctc 21264841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 16075048 - 16074943
Alignment:
Q  59 attaacacatcatcatccacgtgaaccataatgaaatattttcataaaactcatatttctata-ttttcatttatttagtttatcagcaaagtctaacac 157  Q
    ||||||||||||| |||||| |||| || ||   ||||||||||| ||||||| ||||  ||| ||||||||| |||||||||| |  ||| ||||||||    
T  16075048 attaacacatcattatccacatgaatcaaaagtcaatattttcatgaaactcacattttcatatttttcatttctttagtttataaaaaaaatctaacac 16074949  T
Q  158 ttcttt 163  Q
    ||||||    
T  16074948 ttcttt 16074943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 23 - 426
Target Start/End: Original strand, 5004598 - 5004970
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaactcatatttctatat 122  Q
    |||||||||||||||||||| ||||| |||| | |||||||||||||||||||||| || |||| | |||||||||||| |||||||| |||||          
T  5004598 ccactaaggcaaactcatagacaaatacagtaagatattaacacatcatcatccacatggaccaaactgaaatattttcgtaaaactcgtattt------ 5004691  T
Q  123 tttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataactgtcattccacataaca 222  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         
T  5004692 --tcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaataaaataaatgtcattccaca----- 5004784  T
Q  223 ttatctatcatacataacattatctatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattca 322  Q
                  ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  5004785 --------------taacattatc----atacagacatcatataaaatataattaaactaataacttttataaaaggttaaatttcaccatataaattca 5004866  T
Q  323 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagccctt 422  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||    
T  5004867 tattttagttgttttgttcttttcaaaagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagccctt 5004966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 247 - 462
Target Start/End: Original strand, 46404633 - 46404849
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404633 tatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 46404732  T
Q  347 aacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatgggg-aaaaagcccttacctcaaatgttttacctcctag 445  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||| | ||||||||||||    
T  46404733 aacagacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaaagcccttacctcaaacgctttacctcctag 46404832  T
Q  446 tgaaaccctcaatgcac 462  Q
    |||||||||||||||||    
T  46404833 tgaaaccctcaatgcac 46404849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 247 - 427
Target Start/End: Complemental strand, 16975433 - 16975252
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16975433 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 16975334  T
Q  347 aacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtat-ggggaaaaagcccttacctc 427  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||| |||||  |||| |||| |||||||||||||||    
T  16975333 aacaaacaagaatctctacctctaattcataacataatcctagtacttattaagaatgtatggggggaaaagcccttacctc 16975252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 16975624 - 16975453
Alignment:
Q  10 aataatatactcaccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaact 109  Q
    ||||| |||| | ||||||||||||||||||||||||||  ||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||||||    
T  16975624 aataaaatacccgccactaaggcaaactcataggcaaatatagtcacatattaacacatcatcatccacatgaaccaaactgaaatattttcataaaact 16975525  T
Q  110 catatttctatattttcatttatttagtttatcagcaaagtctaacacttcttt-acaataccacaaaaaca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16975524 catatttctatattttcatttatttagtttatcagcaaagtctaacacttctttaacaataccacaaaaaca 16975453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 323 - 426
Target Start/End: Complemental strand, 16475381 - 16475278
Alignment:
Q  323 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagccctt 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| |||||||||||||| | |||    
T  16475381 tattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcttagtacttagtaagaacgtatggggaaaaaactctt 16475282  T
Q  423 acct 426  Q
    ||||    
T  16475281 acct 16475278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 46404537 - 46404615
Alignment:
Q  119 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404537 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaat 46404615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 11967965 - 11968053
Alignment:
Q  251 atacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgt 339  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  11967965 atacacacatcgtataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagattttttgt 11968053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 11937745 - 11937839
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaactcatatttc 117  Q
    |||||||||||| |||||| |||||  || |||  ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  11937745 ccactaaggcaacctcataagcaaacacaatcatgtattaacacatcatcatccacatgaaccaaaataaaatattttcataaaactcatatttc 11937839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 46404466 - 46404546
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcat 103  Q
    |||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||| || |||| | ||||||||||||||    
T  46404466 ccacgaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcat 46404546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 9104261 - 9104174
Alignment:
Q  339 ttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
    |||||||||| ||||||||||  ||||| ||| || |||||| | |||||| ||||| ||| | |||||||||||||| |||||||||    
T  9104261 ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaaaaacgtatggggaaaaaacccttacct 9104174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 415
Target Start/End: Original strand, 17542813 - 17542904
Alignment:
Q  322 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaa 415  Q
    |||||||| |||||||  ||||||||| ||||||||||  ||||| ||| || |||||| | |||||| ||||| ||||| |||||||||||||    
T  17542813 atattttaattgtttt--tcttttcaagagacaagaattgctaccactatttaataacacagtcctaaaacttagtaagaacgtatggggaaaa 17542904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 8730966 - 8730913
Alignment:
Q  259 atcatataaaatataatta-aactaataacttttataaaaggttaaattttacc 311  Q
    ||||||||||| ||||| | || |||||||||||||||||| ||||||||||||    
T  8730966 atcatataaaacataatgagaattaataacttttataaaagattaaattttacc 8730913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 9082853 - 9082800
Alignment:
Q  259 atcatataaaatataatta-aactaataacttttataaaaggttaaattttacc 311  Q
    ||||||||||| ||||| | || |||||||||||||||||| ||||||||||||    
T  9082853 atcatataaaacataatgagaattaataacttttataaaagattaaattttacc 9082800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 11967862 - 11967951
Alignment:
Q  125 tcatttatttagtttatcagcaaagtctaacacttctttac-aataccacaaaa--acatatatgaatagaaaaataaaataactgtcattc 213  Q
    |||||| |||||||||||| |||| |  ||||||||||| | ||||||||||||  ||||||||| |||  |||||||||||| ||||||||    
T  11967862 tcatttctttagtttatcaacaaaat--aacacttctttcccaataccacaaaaaaacatatatgcatatcaaaataaaataaatgtcattc 11967951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 119 - 427
Target Start/End: Complemental strand, 9125 - 8839
Alignment:
Q  119 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa-taaaataactgtcattccaca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  9125 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaaataaaataaatgtcattccaca 9026  T
Q  218 taacattatctatcatacataacattatctatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatga 317  Q
                       ||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  9025 -------------------taacattatc----atacagacatcatataaaatataattaaactaataactgttataaaaggttaaattttaccatgtga 8949  T
Q  318 attcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaag 417  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  8948 attcatattttagttgttttgttcttttcaacagacaagaatttatacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaag 8849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 9196 - 9116
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcat 103  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| || ||||   ||||||||||||||    
T  9196 ccactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaatctgaaatattttcat 9116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 159; Significance: 2e-84; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 247 - 425
Target Start/End: Original strand, 15874008 - 15874186
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 346  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874008 tatcatacagatatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 15874107  T
Q  347 aacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacc 425  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  15874108 aacatacaagaatctctacctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 15874186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 257 - 417
Target Start/End: Original strand, 21491577 - 21491739
Alignment:
Q  257 acatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttg--ttcttttcaacagaca 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  ||||||||||| ||||    
T  21491577 acatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttagtttttttgtcttcttttcaaccgaca 21491676  T
Q  355 agaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaag 417  Q
    ||||||||||||||||||||||||||| |||||| |||||| || |  |||||||| ||||||    
T  21491677 agaatctctacctctaattcataacatcatcctagtacttagtatggacgtatgggaaaaaag 21491739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 247 - 428
Target Start/End: Complemental strand, 22077810 - 22077631
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 346  Q
    ||||||||| |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||| |||| |||||||||||||||  ||||| |     
T  22077810 tatcatacacacatcatataaaatataattaaactaataactttttgaaatggttaaattttaccatataaatttatattttagttgttt--ttcttctt 22077713  T
Q  347 aacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacctca 428  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||| || || | |||||| |||||||||||||||||    
T  22077712 aacagacaagaatctctacctctaattcataacatcatcctagtacttagtatgaacatatgggaaaaaagcccttacctca 22077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 21491350 - 21491568
Alignment:
Q  10 aataatatactcaccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaact 109  Q
    ||||| |||| | |||||||||||| |||||| |||||  || | | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  21491350 aataaaatacccgccactaaggcaacctcataagcaaacacaataagatattaacacatcatcatccacatgaaccaaaatgaaatattttcataaaact 21491449  T
Q  110 catatttctatattttcatttatttagtttatcagcaaagtctaacacttcttt-acaataccac---aaaaacatatatgaatagaaaaataaaataac 205  Q
    |||||| |||||||||||||| |||||||||||| |||| || |||||||||||  |||||||||   ||||||||||||| |||  ||||||||||||     
T  21491450 catattactatattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaaacatatatgcatatcaaaataaaataaa 21491549  T
Q  206 tgtcattccacataacatt 224  Q
    |||||||| ||||||||||    
T  21491550 tgtcattctacataacatt 21491568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 265 - 427
Target Start/End: Original strand, 18367412 - 18367577
Alignment:
Q  265 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagtt--gtttt-gttcttttcaacagacaagaatct 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||||  |||||||||||| ||||||||||    
T  18367412 taaaatataattaaactaataacttttataaaaggttaaattttaccatataaattcatattttaatttggttttctttcttttcaacaaacaagaatct 18367511  T
Q  362 ctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacctc 427  Q
    |||||| |||||||||||||  ||||| | |||| || |  ||||| |||||||||||||||||||    
T  18367512 ctacctttaattcataacatcgtcctagttcttattatggacgtatagggaaaaagcccttacctc 18367577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 18367197 - 18367401
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaactcatatttctatat 122  Q
    |||||||||||| ||||||  ||||  || |||  ||||||||||||||||||||  ||||||| ||||||||||||| ||||| |||||||||||||||    
T  18367197 ccactaaggcaacctcataaccaaacacaatcaggtattaacacatcatcatccatatgaaccaaaatgaaatatttttataaatctcatatttctatat 18367296  T
Q  123 tttcatttatttagtttatcagcaaagtctaacacttcttt-acaataccac--aaaaacatatatgaatagaaaaataaaataactgtcattccacata 219  Q
    |||||||| |||||||||||| |||| || |||||||||||  |||||||||  ||||||||||||| |||  |||||||||||| |||||||| || ||    
T  18367297 tttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaaacatatatgcatatcaaaataaaataaatgtcattctacgta 18367396  T
Q  220 acatt 224  Q
    |||||    
T  18367397 acatt 18367401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 247 - 426
Target Start/End: Complemental strand, 48576509 - 48576332
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaa-ctaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttctttt 345  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||| |||| |  |||||||||||||||| ||||||||||||| || ||||   |||||    
T  48576509 tatcatacacacatcatataatatataattaaaactaataactttaataagatattaaattttaccatataaattcatattttaattatttt---ctttt 48576413  T
Q  346 caacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
     ||| || |||||||||||||||||||||||||||| |||| | |||||| || |  ||||||||||||||||||||||||    
T  48576412 taacggataagaatctctacctctaattcataacattatcccagtacttagtatggacgtatggggaaaaagcccttacct 48576332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 15873911 - 15873988
Alignment:
Q  119 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873911 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa 15873988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 15873840 - 15873920
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcat 103  Q
    |||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||| || |||| | ||||||||||||||    
T  15873840 ccacgaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcat 15873920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 426
Target Start/End: Complemental strand, 9993427 - 9993291
Alignment:
Q  290 ttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaa 389  Q
    ||||||||  ||| |||||||||||| |||  |||||||| ||||||| |||||||||| ||||||||||   |||| ||| || |||||| |  ||||     
T  9993427 ttataaaatattagattttaccatataaataaatattttaattgttttcttcttttcaaaagacaagaattgttacccctatttaataacaaagccctag 9993328  T
Q  390 tacttaataagaccgtatggggaaaaagcccttacct 426  Q
     ||||| ||||| ||| ||||||||||||||||||||    
T  9993327 cacttagtaagaacgtgtggggaaaaagcccttacct 9993291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 285 - 427
Target Start/End: Original strand, 48654339 - 48654479
Alignment:
Q  285 aacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataat 384  Q
    ||||||| ||||  ||||||| ||||||  | |||  ||||||||||||||||  ||||| ||| |||||||||| | ||| ||||||||| ||||| ||    
T  48654339 aacttttgtaaactgttaaatattaccacctaaatatatattttagttgtttt--tctttccaaaagacaagaatttgtacttctaattcacaacatcat 48654436  T
Q  385 cctaatacttaataagaccgtatggggaaaaagcccttacctc 427  Q
    |||| |||||| || |  |||||||||||||| ||||||||||    
T  48654437 cctagtacttagtatggacgtatggggaaaaaacccttacctc 48654479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 426
Target Start/End: Original strand, 12196729 - 12196816
Alignment:
Q  339 ttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
    ||||||| || ||||||||||  ||||| ||| || |||||||| ||||   ||||| |||||  |||||||||||||||||||||||    
T  12196729 ttctttttaaaagacaagaattgctaccactatttaataacatagtccttgcacttagtaagaatgtatggggaaaaagcccttacct 12196816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 22077860 - 22077807
Alignment:
Q  174 aaaaacatatatgaatagaaaaataaaataactgtcattccacataacattatc 227  Q
    ||||||||||||| |||| ||||||||  || |||||||| |||||||||||||    
T  22077860 aaaaacatatatgcataggaaaataaagcaaatgtcattctacataacattatc 22077807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 23 - 445
Target Start/End: Original strand, 4557839 - 4558241
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaactcatatttctatat 122  Q
    |||||||||||| |||||| |||||  || |||  |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||    
T  4557839 ccactaaggcaacctcataagcaaacacaatcaggtattaacatatcatcatccacatgaaccaaaatgaaatattttcataaaactcatatttatatat 4557938  T
Q  123 tttcatttatttagtttatcagcaaagtctaacacttcttta-caataccacaaaaa--catatatgaatagaaaaataaaataactgtcattccacata 219  Q
    |||||||| |||||||||||| |||| || |||||||||||  ||||||||||||||  |||||||| |||  ||||||||||||  |||||||          
T  4557939 tttcatttctttagtttatcaacaaaatccaacacttctttctcaataccacaaaaaaacatatatgcatatcaaaataaaataaaagtcattc------ 4558032  T
Q  220 acattatctatcatacataacattatctatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaat 319  Q
                 ||| |||||||||     ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  4558033 -------------tacgtaacattatt----atacacacattatataaaatatgattaaactaataacttttataaaaggttaaattttaccatataaat 4558115  T
Q  320 tcatattttagttgttttgt-tcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaata-agaccgtatggggaaaaag 417  Q
    ||||||||||||| |||| | |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||| ||||| |||||||||    
T  4558116 tcatattttagtttttttctctcttctcaacagacaagaatctctacctctaaatcataacatcatcctaatacttagtataga-cgtat-gggaaaaag 4558213  T
Q  418 cccttacctcaaatgttttacctcctag 445  Q
    ||||||||||  | ||||||||||||||    
T  4558214 cccttacctcgtacgttttacctcctag 4558241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 265 - 425
Target Start/End: Complemental strand, 536891 - 536731
Alignment:
Q  265 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctcta 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536891 taaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctcta 536792  T
Q  365 cctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacc 425  Q
    |||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||    
T  536791 cctctaattcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacc 536731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 536993 - 536895
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttctttt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536993 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttctttt 536895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 537090 - 537013
Alignment:
Q  119 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537090 atattttcatttatttagtttatcagcaaagtctaacacttctttacaataccacaaaaacatatatgaatagaaaaa 537013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 537161 - 537081
Alignment:
Q  23 ccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcat 103  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| || |||| | ||||||||||||||    
T  537161 ccactaaggcaaactcatagacaaatacagtcagatattaacacatcatcatccacatggaccaaactgaaatattttcat 537081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 426
Target Start/End: Complemental strand, 27026708 - 27026621
Alignment:
Q  339 ttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
    |||||||||| ||||||||||   |||| ||| || |||||| |||||||  ||||| ||| | ||||||||||||||||||||||||    
T  27026708 ttcttttcaaaagacaagaattgttaccactatttaataacacaatcctagcacttagtaaaaacgtatggggaaaaagcccttacct 27026621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 6308710 - 6308625
Alignment:
Q  339 ttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttac 424  Q
    |||||||||| ||||||||||  ||||| ||| || |||||| | |||||| | ||||||||| | |||||| |||||||||||||    
T  6308710 ttcttttcaagagacaagaattgctaccactatttaataacacagtcctaacatttaataagaacctatgggaaaaaagcccttac 6308625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 275 - 427
Target Start/End: Original strand, 32735391 - 32735543
Alignment:
Q  275 ttaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattc 374  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32735391 ttaaactaatatcttttataaaaggttaaatttcaccatatgaatgcatattttagttgttttgttcttttcaacagacaagaatctctacctctaattc 32735490  T
Q  375 ataacataatcctaatacttaataagaccgtatggggaaaaagcccttacctc 427  Q
    ||||||||||||||  ||||| ||||| |||||||||||||||||||||||||    
T  32735491 ataacataatcctagcacttagtaagaacgtatggggaaaaagcccttacctc 32735543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 426
Target Start/End: Original strand, 12774954 - 12775056
Alignment:
Q  322 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagccct 421  Q
    ||||||||||||||||  ||||| ||| ||| |||||| | ||| ||||||||| ||||| |||||| |||||  || |  |||||||||||||||||||    
T  12774954 atattttagttgtttt--tctttccaaaagataagaatttgtacttctaattcacaacatcatcctagtactttgtatggacgtatggggaaaaagccct 12775051  T
Q  422 tacct 426  Q
    |||||    
T  12775052 tacct 12775056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 29270792 - 29270702
Alignment:
Q  267 aaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaat 359  Q
    ||||||||||||| |||||| ||||||||||  ||||||||||| || | | | ||||||||| ||||||  |||||||||| ||||||||||    
T  29270792 aaatataattaaaataataatttttataaaatattaaattttactatgtaactacatattttaattgttt--ttcttttcaaaagacaagaat 29270702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 427
Target Start/End: Complemental strand, 1193765 - 1193598
Alignment:
Q  259 atcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaa 358  Q
    |||||||||||   ||||||| |||| ||| ||||||||  ||| | |||||||| | |||  |||||||| ||||||| |||||||||| |||||||||    
T  1193765 atcatataaaactcaattaaaataatcactcttataaaatattagactttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaa 1193666  T
Q  359 tctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacctc 427  Q
    |  ||||| ||  || |||||| | | |||  ||||| ||||| | ||| |||||||||||||||||||    
T  1193665 ttgctacccctgtttaataacaaagtactagcacttagtaagaacttat-gggaaaaagcccttacctc 1193598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 426
Target Start/End: Original strand, 28267692 - 28267793
Alignment:
Q  322 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagccct 421  Q
    |||||||||||||||  |||||||||| ||| |||||| | ||| ||||||||| ||||| |||||| |||||| || |  ||||| |||||||| ||||    
T  28267692 atattttagttgttt--ttcttttcaaaagataagaatttgtacttctaattcacaacatcatcctagtacttagtatggacgtat-gggaaaaaaccct 28267788  T
Q  422 tacct 426  Q
    |||||    
T  28267789 tacct 28267793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 247 - 426
Target Start/End: Original strand, 28969254 - 28969431
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 346  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||  ||||| ||    
T  28969254 tatcatacacacatcatatagaatataattaaactaataacttttataaaatgttaaattttaccatataaattaatattttagttgttt--ttcttctc 28969351  T
Q  347 aacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
    ||||||||||||| ||||||||||||||||||||| |||||| |||||| || |  |||||| ||||||| |||||||||    
T  28969352 aacagacaagaatttctacctctaattcataacatcatcctagtacttagtatggacgtatgaggaaaaaacccttacct 28969431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 49499406 - 49499191
Alignment:
Q  10 aataatatactcaccactaaggcaaactcataggcaaattcagtcaaatattaacacatcatcatccacgtgaaccataatgaaatattttcataaaact 109  Q
    ||||| |||| | |||||||||||| |||||| |||||  || | |  ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  49499406 aataaaatacccgccactaaggcaacctcataagcaaacacaattaggtattaacacatcatcatccacatgaaccaaaatgaaatattttcataaaact 49499307  T
Q  110 catatttctatattttcatttatttagtttatcagcaaagtctaacacttcttt-acaataccac-aaaaacatatatgaatagaaaaataaaataactg 207  Q
    ||||||||||||||||||||| |||||||||||| |||| || |||||||||||  ||||||||| ||||||||||||| |||  |||||||||||| ||    
T  49499306 catatttctatattttcatttctttagtttatcaacaaaatccaacacttctttcccaataccacaaaaaacatatatgcatatcaaaataaaataaatg 49499207  T
Q  208 tcattccacataacat 223  Q
    |||||| || ||||||    
T  49499206 tcattctacgtaacat 49499191  T

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Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 251 - 393
Target Start/End: Complemental strand, 49499187 - 49499045
Alignment:
Q  251 atacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaaca 350  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||| ||||||    
T  49499187 atacacacattatataaaatataattaaactaataatttttataaaaggttaaattttactatataaattcatattttagttttttttttcttctcaaca 49499088  T
Q  351 gacaagaatctctacctctaattcataacataatcctaatact 393  Q
    |||||||||||| |||||||||||||||||| |||||| ||||    
T  49499087 gacaagaatctccacctctaattcataacatgatcctagtact 49499045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 41868655 - 41868570
Alignment:
Q  340 tcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
    ||||||||| |||||||||| ||||| ||||||||| ||||| ||||||||||||| || |  ||||| |||||||||| |||||||    
T  41868655 tcttttcaagagacaagaatttctacttctaattcacaacatcatcctaatacttagtatggacgtat-gggaaaaagcacttacct 41868570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 28969204 - 28969257
Alignment:
Q  174 aaaaacatatatgaatagaaaaataaaataactgtcattccacataacattatc 227  Q
    ||||||||||||| |||| |||||||||||| |||||||| |||||| ||||||    
T  28969204 aaaaacatatatgcatagcaaaataaaataaatgtcattctacataaaattatc 28969257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 247 - 381
Target Start/End: Complemental strand, 353 - 221
Alignment:
Q  247 tatcatacagacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttc 346  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||| || |||  |||||||     
T  353 tatcatacacacatcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatagatttatattttaattattt--ttcttttt 256  T
Q  347 aacagacaagaatctctacctctaattcataacat 381  Q
    |||| ||||||||||||| ||||||||||||||||    
T  255 aacaaacaagaatctctatctctaattcataacat 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 322 - 427
Target Start/End: Original strand, 22816487 - 22816590
Alignment:
Q  322 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagccct 421  Q
    |||||||| |||||||  ||||||||| ||||||||||  | ||| ||| || |||||| | |||||| |||||  |||| |||||||||||||||||||    
T  22816487 atattttaattgtttt--tcttttcaagagacaagaattgcaaccactatttaataacacagtcctaacacttagcaagaacgtatggggaaaaagccct 22816584  T
Q  422 tacctc 427  Q
    ||||||    
T  22816585 tacctc 22816590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 35839268 - 35839168
Alignment:
Q  259 atcatataaaatataattaaactaataacttttataaaaggttaaattttaccatatgaattcatattttagttgttttgttcttttcaacagacaagaa 358  Q
    |||||||||||   ||||||| |||| ||| ||||||||  ||| |||||||||| | |||  |||||||| ||||||| |||||||||| |||||||||    
T  35839268 atcatataaaactcaattaaaataatcactcttataaaatattagattttaccatgtaaataaatattttaattgttttcttcttttcaaaagacaagaa 35839169  T
Q  359 t 359  Q
    |    
T  35839168 t 35839168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 40841568 - 40841652
Alignment:
Q  339 ttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttac 424  Q
    |||||||||| ||||||||||  ||||| ||| || |||||| | |||||| ||||| ||||| |||||||| |||||||||||||    
T  40841568 ttcttttcaaaagacaagaattgctaccactatttaataacacagtcctaacacttagtaagaacgtatggg-aaaaagcccttac 40841652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 20264999 - 20265076
Alignment:
Q  351 gacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacctca 428  Q
    ||||||||| |||||| ||| |||| ||||  ||||||  ||||| ||||| ||||| |||||||| |||||||||||    
T  20264999 gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacctca 20265076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 428
Target Start/End: Original strand, 21051628 - 21051705
Alignment:
Q  351 gacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacctca 428  Q
    ||||||||| |||||| ||| |||| ||||  ||||||  ||||| ||||| ||||| |||||||| |||||||||||    
T  21051628 gacaagaatttctaccactacttcaaaacacgatcctagcacttactaagaacgtatcgggaaaaatcccttacctca 21051705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 2645 - 2720
Alignment:
Q  351 gacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagcccttacct 426  Q
    ||||||||| |||||| ||| || |||||| | |||||  ||||| ||||| ||||||||||||||||||||||||    
T  2645 gacaagaatttctaccactattttataacaaagtcctagcacttagtaagaacgtatggggaaaaagcccttacct 2720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 322 - 427
Target Start/End: Original strand, 243170 - 243275
Alignment:
Q  322 atattttagttgttttgttcttttcaacagacaagaatctctacctctaattcataacataatcctaatacttaataagaccgtatggggaaaaagccct 421  Q
    |||||||| ||||||| |||||||||| ||||||||||   |||| ||| || |||||| |  ||||| ||||| |||||  |||||||||||| ||| |    
T  243170 atattttaattgttttcttcttttcaaaagacaagaattgatacccctatttaataacaaagccctaacacttagtaagaatgtatggggaaaacgccat 243269  T
Q  422 tacctc 427  Q
    ||||||    
T  243270 tacctc 243275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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