View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_17 (Length: 457)
Name: NF0844_low_17
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 30 - 445
Target Start/End: Complemental strand, 41219471 - 41219054
Alignment:
| Q |
30 |
tgtaagtgtatgttttcatcctcaaacatagtaatgttggtgttttgacacatgatgaataagataattcaatatgaactagttgaagttagacttgatt |
129 |
Q |
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| T |
41219471 |
tgtaagtgtttgttttcatcctcaaacatagtaatgttggtgttttgacacatgatgaataagataattcaatatgaactagttgaagttagacttgatt |
41219372 |
T |
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| Q |
130 |
caaacatttaataatta-cacactaaagctaagaaatcaagttttgatcccttgatatatgcttcatttctacatttagcacattatttaggtttggatt |
228 |
Q |
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| T |
41219371 |
caaacatttaataattaacacaataaagctaagaaatcaagttttgatcccttgatatatgcttcatttctacatttagcacgttatttaggtttggatt |
41219272 |
T |
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| Q |
229 |
ctgttagattctcctgtcgaaatacgggaaaactccatttaattctcgatggaaacggagttttgcgaattctccctagaactggaagatatgttcgaga |
328 |
Q |
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| T |
41219271 |
ctgttagattctcctgtcgaaatacgggaaaactccatttaattctcgatggaaacggagttttgcgaattctccctagaactggaagatatgttcaaga |
41219172 |
T |
|
| Q |
329 |
tcttcgaacatattcgagggttcaatgtgactattgtaacttcggccaacacacaa-atgagactttaccacatcttattgctttcaactcatttgtttc |
427 |
Q |
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| T |
41219171 |
tcttcgaacatattcgagggttcaatgtgactattgtaacttcggccaacacacaatatgagactttaccacatcttattgctttcaactcatttgtttc |
41219072 |
T |
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| Q |
428 |
tataaccatttggatatt |
445 |
Q |
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| T |
41219071 |
tataaccatttggatatt |
41219054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 13340832 - 13340782
Alignment:
| Q |
350 |
tcaatgtgactattgtaacttcggccaacacacaa-atgagactttaccac |
399 |
Q |
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| T |
13340832 |
tcaatgtgactattgtaacttcgaccaacacataataagagactttaccac |
13340782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 24499410 - 24499336
Alignment:
| Q |
323 |
tcgagatcttcgaacatattcgagggttcaatgtgactattgtaacttcggccaacacacaa-atgagactttac |
396 |
Q |
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| T |
24499410 |
tcgagatcttcgaacatattcgaggattcaatgtgattattgtaacttcgaccaacacacaatatgagactttac |
24499336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 254 - 377
Target Start/End: Original strand, 39462183 - 39462312
Alignment:
| Q |
254 |
gggaaaactccatttaattctcgatggaaacg------gagttttgcgaattctccctagaactggaagatatgttcgagatcttcgaacatattcgagg |
347 |
Q |
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|||||||||||||| |||| ||||||||| || ||||||||| |||| |||| |||| |||||||| || ||||||||||| |||||||||| |
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| T |
39462183 |
gggaaaactccattcaattatcgatggaatcgagaagggagttttgcaaattatccccagaagtggaagattatttttagatcttcgaaaatattcgagg |
39462282 |
T |
|
| Q |
348 |
gttcaatgtgactattgtaacttcggccaa |
377 |
Q |
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| T |
39462283 |
attcaatgtgactactgtcactttggccaa |
39462312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 39409229 - 39409177
Alignment:
| Q |
230 |
tgttagattctcctgtcgaaatacgggaaaactccatttaattctcgatggaa |
282 |
Q |
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| T |
39409229 |
tgttagattctctagtcgaaatacggggaaactccattcaattctcgatggaa |
39409177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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