View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0844_low_2 (Length: 605)
Name: NF0844_low_2
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 52623668 - 52623379
Alignment:
| Q |
18 |
tttatgcgttagttttggattcacatatatatatgcaggttcagaaaatagcacttgctgaccaattgagtttaaaggcaagacaaatagaagtttggtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
52623668 |
tttatgcgttagttttggattcacatatatat--gcaggttcagaaaatagcacttgctgaccaattgagtttaaagacaagacaaattgaagtttggtt |
52623571 |
T |
|
| Q |
118 |
tcagaacaggagagcaaggtacgttaattaattaatttatgggtccatttcattgatcttataactatgttgttacttttgtctaccattaatttttctt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52623570 |
tcagaacaggagagcaaggtacgttaattaattaatttatgggtccatttcattgatcttataactatgttgttacttttgtctaacattaatttttctt |
52623471 |
T |
|
| Q |
218 |
catattatctgggtttcataactgaatatatcacctatttaattttat--------ttatgttgttgactaagttatcgattgtggatgtag |
301 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52623470 |
catattatctgggtttcgtaactgaatatatcacctatttaattttatttatttatttatgttgttgactaagttatcgattgtggatgtag |
52623379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 368 - 496
Target Start/End: Complemental strand, 52623315 - 52623187
Alignment:
| Q |
368 |
acacaggactaagctgaagcagatagaggtggattatgagttgttgaaaaaacattgtcaaaatctaagcgatgagaacaaaagattaaagaaggaatta |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52623315 |
acacaggactaagctgaagcagatagaggtggattatgagttgttgaaaaaacattgtcaaaatctaagtgatgagaacaaaagattaaagaaggaattg |
52623216 |
T |
|
| Q |
468 |
caggaactcaaagttgttggacaattccc |
496 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
52623215 |
caggaactcaaggttgttggacaattccc |
52623187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 16810252 - 16810322
Alignment:
| Q |
68 |
gcacttgctgaccaattgagtttaaaggcaagacaaatagaagtttggtttcagaacaggagagcaaggta |
138 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||| | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
16810252 |
gcacttgctgaggaattgaatttaaagcaaagacaggttgaagtttggttccagaacagaagagcaaggta |
16810322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 16849533 - 16849603
Alignment:
| Q |
68 |
gcacttgctgaccaattgagtttaaaggcaagacaaatagaagtttggtttcagaacaggagagcaaggta |
138 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||| | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
16849533 |
gcacttgctgaggaattgaatttaaagcaaagacaggttgaagtttggttccagaacagaagagcaaggta |
16849603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1556 times since January 2019
Visitors: 6145