View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_20 (Length: 448)
Name: NF0844_low_20
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 23 - 441
Target Start/End: Complemental strand, 35662211 - 35661788
Alignment:
| Q |
23 |
atcatcacaacttcacgaaggttcagggataagaaaggctgaaagacgtgtacgcgaataaacagaatctaatatcatacgaaaaactaaatacagatgt |
122 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35662211 |
atcaccacaacttcacgaaggttcagggataagaaaggctgaaagacgtttacgcgaataaacagaatctaatatcatacgaaaaactaaatacagatgt |
35662112 |
T |
|
| Q |
123 |
ggtagtttcctggaagaacatacccacataggagtcaaataagatgacaattcttcaaagaaaggcaagaaggatgctttgaaggttttgatcaaagttc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35662111 |
ggtagtttcctggaagaacatacccacataggagtcaaataagatgacaattcttcaaagaaaggcaagaaggatgctttgaaggttttgatcaaagttc |
35662012 |
T |
|
| Q |
223 |
ccaatatctcgcccacctgatagcagccaagcaaacaaaggtgtcaaatattttaaaaggaggaccagcaaacaaaggtagcagccaagcaaatgtgaag |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35662011 |
ccaatatctcgcccacctgatagcagccaagcaaacaaaggtgtcaaatattttaaaaggaggaccagcaaacaaaggtagcagccaagcaaatgtgaag |
35661912 |
T |
|
| Q |
323 |
gtttaaattgtat-----aaagaaatactaacttggtcaaaaacttcttcctcctgctcgttttcctctttaattagctccccctcttcagcatcaaaat |
417 |
Q |
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||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35661911 |
gtttaaattatataatacaaagaaatactgacttggtcaaaaacttcttcctcctgctcgttttcctctttaattagctccccctcttcagcatcaaaat |
35661812 |
T |
|
| Q |
418 |
cttcagcttgggccctctctgctc |
441 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
35661811 |
cttcagcttgggccctctctgctc |
35661788 |
T |
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