View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_21 (Length: 442)
Name: NF0844_low_21
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 7 - 350
Target Start/End: Complemental strand, 3641795 - 3641452
Alignment:
| Q |
7 |
cttttgatacgaaccttgctccctgtaaacactatatggttagtatcttaaaattcattcagagtctgctgaattcagcaaatgccctctgattctgcat |
106 |
Q |
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| T |
3641795 |
cttttgatacgatcctttctctctgtaaacattatatggttagtctcttaaaattcattcagagtctgctgaattcagcaactgccctctgattctgcat |
3641696 |
T |
|
| Q |
107 |
ttctctttaacgacatcttagataaaccactgaggatcaaaaagcagaagttactgcacagcaagcagtttcggtaacattttttacccacatatcttat |
206 |
Q |
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| T |
3641695 |
tgctctttaacgacgtctaagataaaccactaaggatcaaaaagcagaagttactgcacagcaagcagtttcggtaacattttttacccacatatcttat |
3641596 |
T |
|
| Q |
207 |
tgtatagatatttatatttgtaattagatatatttgtaaagcatgtacgctgacattgtaaagannnnnnnagcaaccttagacaatgccgcgatcaagg |
306 |
Q |
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| T |
3641595 |
tgtatagatatttatatttgtaattagatatatttgtcaagcatgtacgctgacattgtaaagatttttttagcaaccttagacaatgccgcgatcaagg |
3641496 |
T |
|
| Q |
307 |
acctagaatgtactggtggaatcatgaagataaataagtgaaat |
350 |
Q |
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| T |
3641495 |
acccagaatgtactggtggaatcatgaagataaataagtgaaat |
3641452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 350 - 434
Target Start/End: Complemental strand, 3641400 - 3641316
Alignment:
| Q |
350 |
ttttctgtaattttctgtaatgtattggcagcttttgtgtggatgaagttgcacaactttttgaactatgcatttttcctatgct |
434 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3641400 |
ttttctgtaattttctgtaatgtattggcagctgttgtgtggatgaagttgcacaactttttgaactatgcatttttcctttgct |
3641316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 3645951 - 3645834
Alignment:
| Q |
84 |
gcaaatgccctctgattctgcatttctctttaacgac------atcttagataaaccactgaggatcaaaaagcagaagttactgcacagcaagcagttt |
177 |
Q |
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|||| |||| |||||||| ||||| |||||||||||| |||||| || |||||| |||||||| ||||||| ||||| ||||||||| |||||| |
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| T |
3645951 |
gcaattgccttctgattccgcattgctctttaacgacgatgccatcttacatgaaccaccaaggatcaagaagcagaggttaccgcacagcaaacagttt |
3645852 |
T |
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| Q |
178 |
cggtaacattttttaccc |
195 |
Q |
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|||||||| ||||||||| |
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| T |
3645851 |
cggtaacactttttaccc |
3645834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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