View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_27 (Length: 402)
Name: NF0844_low_27
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Complemental strand, 5441105 - 5440716
Alignment:
| Q |
10 |
aacaatatcttttgctatgggaccacgacatgaacattttttcatttgtaaggacatgaatgggtttagatttctagcatgaaatagaatgtagttggaa |
109 |
Q |
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| T |
5441105 |
aacaatatcttttgctatgggaccacgacatgaacattttttcatttgtaaggacatgaatgggtttagatttctagcatgaaatagaatgtagttggaa |
5441006 |
T |
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| Q |
110 |
tgtgtctcaagttctcccatcactagtaaaaaaggaaattcaatcatgtcctaagataacattttgcaaataaaatgcatcaaaagaatctgtaatatat |
209 |
Q |
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| T |
5441005 |
tgtgtctcaagttctcccatcactagttaaaaaggaaattcaatcatgtcctaagataacattttgcaaataaaatgcatcaaaagaatctcta--atat |
5440908 |
T |
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| Q |
210 |
ttttatctttttctgggccagtggaggattttcaacaatctttatgaattgttcttcctgtctgtctaaaagtgatgaaaatatgtagttttatgaaatg |
309 |
Q |
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| T |
5440907 |
ttttatctttttctgggccagtcgaggattttcaacaatctttatgaattattcttcctgtctgtctaaaagtgatgaaaatatgtagttttatgaaatg |
5440808 |
T |
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| Q |
310 |
ttttaattttcacattttatgctcaactagaattttggttacacatacttcaaggaatgannnnnnnatcatgtaacatggtttgtttgagtc |
402 |
Q |
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| T |
5440807 |
ttttaattttcacattttatgctcaactagaattttggttacacatacttcaaggaatga-ttttttatcatgtaacatggtttgtttgagtc |
5440716 |
T |
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