View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_28 (Length: 402)
Name: NF0844_low_28
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 402
Target Start/End: Complemental strand, 5441102 - 5440716
Alignment:
| Q |
13 |
aatatcttttgctatgggaccacgacatgaacattttttcatttgtaaggacatgaatgggtttagatttctagcatgaaatagaatgtagttggaatgt |
112 |
Q |
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| T |
5441102 |
aatatcttttgctatgggaccacgacatgaacattttttcatttgtaaggacatgaatgggtttagatttctagcatgaaatagaatgtagttggaatgt |
5441003 |
T |
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| Q |
113 |
gtctcaagttctcccatcactagtaaaaaaggaaattcaatcatgtcctaagataacattttgcaaataaaatgcatcaaaagaatctgtaatatatttt |
212 |
Q |
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| T |
5441002 |
gtctcaagttctcccatcactagttaaaaaggaaattcaatcatgtcctaagataacattttgcaaataaaatgcatcaaaagaatctcta--atatttt |
5440905 |
T |
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| Q |
213 |
tatctttttctgggccagtggaggattttcaacaatctttatgaattgttcttcctgtctgtctaaaagtgatgaaaatatgtagttttatgaaatgttt |
312 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5440904 |
tatctttttctgggccagtcgaggattttcaacaatctttatgaattattcttcctgtctgtctaaaagtgatgaaaatatgtagttttatgaaatgttt |
5440805 |
T |
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| Q |
313 |
taattttcacattttatgctcaactagaattttggttacacatacttcaaggaatgannnnnnnatcatgtaacatggtttgtttgagtc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5440804 |
taattttcacattttatgctcaactagaattttggttacacatacttcaaggaatga-ttttttatcatgtaacatggtttgtttgagtc |
5440716 |
T |
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