View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_3 (Length: 588)
Name: NF0844_low_3
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 119 - 583
Target Start/End: Complemental strand, 39583154 - 39582690
Alignment:
| Q |
119 |
tttcttgcactcatatcatatgcaaatatactattgacgtgcgtctgtagttgaaaatttgaacataacagatctgaactgactgataatgagaatgaat |
218 |
Q |
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| T |
39583154 |
tttcttgcactcatatcatatgcaaatatactattgacgtgcgtctgtagttgaaaatttgaacataacagatctgaactgactgataatgagaatgaat |
39583055 |
T |
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| Q |
219 |
agaatattgatgcaaattttaataatgtggcagtctactaatttaagttttaaattagctgaaatagtacatcaataaataactcaataagcgtaccttt |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39583054 |
agaatattgatgcaaattttaatattgtggcagtctactaatttaagttttaaattagctgaaatagtacatcaataaataactcaataagcgtaccttt |
39582955 |
T |
|
| Q |
319 |
tgaaagttttaaacaaacnnnnnnnnnnnctcacgttttacgcacaccatatataactatataagcatgtttaagaagcacaatcttctagttcagattt |
418 |
Q |
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| T |
39582954 |
tgaaagttttaaacaaacaaaaaaaaaaactcacgttttacgcacaccatatataactatataagcatgtttaagaagcacaatcttctagttcagattt |
39582855 |
T |
|
| Q |
419 |
tcgttttttgtacaagatatcatataaatgttccaagaaacttcatatatagttcatatttcatggtacccagctgcttgattcgtcgagactgttctgt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39582854 |
tcgttttttgtacaagatatcatataaatgttccaagaaacttcatatatagttcatatttcatggtacccagctgcttgattcgtcgagactgttctgt |
39582755 |
T |
|
| Q |
519 |
tactaaataaaaattctcatctctccctccctctctcaagtgtcttctgttttgttcttttctgt |
583 |
Q |
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| T |
39582754 |
tactaaataaaaattctcatctctccctccctctctcaagtgtcttccgttttgttcttttctgt |
39582690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39583268 - 39583178
Alignment:
| Q |
1 |
atgataacatgtgcttttgaattggagacagagagaaggactnnnnnnnnnnntgttctatgtgtgaaacaaaaaaaagt-taaatataaa |
90 |
Q |
| |
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||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
39583268 |
atgataacatgtgcttttgcattggaggcagagagaaggactaaaacaaaacatgttctatgtgtgaaacaaaaaaaagtgtaaatataaa |
39583178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 39618359 - 39618427
Alignment:
| Q |
162 |
tctgtagttgaaaatttgaacataacagatctgaactgactgataatgagaatgaatagaatattgatg |
230 |
Q |
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||||||| |||||||||||||||||| ||| |||| | |||||||||||||| || ||||||||||| |
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| T |
39618359 |
tctgtagatgaaaatttgaacataactgattggaacagcgtgataatgagaatgcatggaatattgatg |
39618427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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