View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_30 (Length: 400)
Name: NF0844_low_30
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 37404848 - 37405152
Alignment:
| Q |
13 |
aatattacaaaaagaggaggattccatgagagaaagagatgggaaa-atctacctttcatagaaacatctgaccttgaacacgacacattgccggcttat |
111 |
Q |
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| T |
37404848 |
aatattacaaaaagaggaggattccttgagagaaagagatgggattcatctacctttcatagaaacatccgaccttgaacacgacacattgccggcttat |
37404947 |
T |
|
| Q |
112 |
gtcacaaaagttccacgcccggacagatttctattttggcaaagcttctaatattctttgaatccaaggaatcaagccaagttggaaggcaggcttcttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
37404948 |
gtcacaaaagttccacgcccggacagatttctattttggtaaagcttctaatattctttgaatccaaggaatcaagccaagttgtaaggcatgcttcttt |
37405047 |
T |
|
| Q |
212 |
agaatcttttgggtataaaaacaaaggaaaacaatacattttgagcaactaaagatattaaatgtcaagggtatctggttcttgcttctttaaattgtga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37405048 |
agaatcttttgggtataaaaacaaaggaaaacaatacattttgagcaactaaagatattaaatgtcaagggtatctggttcttgcttctttaaattgtga |
37405147 |
T |
|
| Q |
312 |
ggaat |
316 |
Q |
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||||| |
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| T |
37405148 |
ggaat |
37405152 |
T |
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