View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_31 (Length: 381)
Name: NF0844_low_31
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 370
Target Start/End: Complemental strand, 29206293 - 29205935
Alignment:
| Q |
30 |
ttaacaaccccattaaatagaagctttatacagttgcgaagagaagcatctataatgtcacattaatttcatgcatgtt----------------atgcc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29206293 |
ttaacaaccccattaaatagaagctttatacagttgcgaagagaagcatctataatgtcacattaatttcatgcatgttgtacactatccatgccatgcc |
29206194 |
T |
|
| Q |
114 |
atagagagaaaacttgagagcttttgtaccatatagcctagctccacttaattagacggcgagannnnnnnnnnnnnnnnnnatgtattctttgtcacaa |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29206193 |
atagagagaaaacttaagagcttttgtaccatatagcctagctccacttaattagacggcgagatttttttattttttttt-atgtattctttgtcacaa |
29206095 |
T |
|
| Q |
214 |
ataataaagatgaatcgtgttttttgtgtcctttgattaaggatctttacataccataccaa--ttggaaatgaactgaatagaattatcacagatcatc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
29206094 |
ataataaagatgaatcgtgttttttgtgtcctttgattaaggatctttacataccatgccttgtttggaaatgaactgaatagaattatcacagatcatc |
29205995 |
T |
|
| Q |
312 |
attaattttctacaatattttctcatctcaggtgattaac-tgatcatatgagagcattc |
370 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29205994 |
attaattttctacagtattttctcatctcaggtgattaacttgatcatatgagagcattc |
29205935 |
T |
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