View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_32 (Length: 379)
Name: NF0844_low_32
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 28 - 373
Target Start/End: Complemental strand, 43091986 - 43091654
Alignment:
| Q |
28 |
aatatcttctacattaatgcaacttatattttctcttattatggaaaagtaaaattctgcaaactttacatgtcttatattatctccagttttatgtaaa |
127 |
Q |
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| T |
43091986 |
aatatcttctacattaatgcaacttatattttctcttattatggaaaagtaaaattctgcaaactttacatgtcttatattatctccagttttatgtaaa |
43091887 |
T |
|
| Q |
128 |
agtttgcatgcatatattcatttcatttgagcataatttagaaatctatatttaaatttagaaatctatatttatgttattttgaccacttgaaaaggac |
227 |
Q |
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| T |
43091886 |
agtttgcatgcatatattcatttcatttgagcataatttagaaatgtat--------------------atttatgttattttgaccacttgaaaaggac |
43091807 |
T |
|
| Q |
228 |
gataag-------nnnnnnnnnagtgttgtaattgcttgtgtttgttatgtcttgttaagatcttaatcagctgatttcagatgacaaataccatccaga |
320 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091806 |
gataagttttttttttttttttagtgttataattgcttgtgtttgttatgtcttgttaagatcttaatcagctgatttcagatgacaaataccatccaga |
43091707 |
T |
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| Q |
321 |
aaaagtttaaggtttcttctactcaacttctatatcaatcatgttcatatcag |
373 |
Q |
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| T |
43091706 |
aaaagtttaaggtttcttctactcaacttctatatcaatcatgtccatatcag |
43091654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 372
Target Start/End: Complemental strand, 43084231 - 43084142
Alignment:
| Q |
283 |
cttaatcagctgatttcagatgacaaataccatccagaaaaagtttaaggtttcttctactcaacttctatatcaatcatgttcatatca |
372 |
Q |
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|||||| ||| | ||||||||||||||||| |||||||| |||| |||||||||||||| || |||||||| ||||||||| ||||||| |
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| T |
43084231 |
cttaattagccgctttcagatgacaaatactatccagaagaagtacaaggtttcttctacccagcttctataccaatcatgtccatatca |
43084142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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