View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0844_low_4 (Length: 581)
Name: NF0844_low_4
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 70 - 568
Target Start/End: Complemental strand, 42740868 - 42740359
Alignment:
| Q |
70 |
gttatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtgtg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42740868 |
gttatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttatgctggataccgagtggaatgagtgtg |
42740769 |
T |
|
| Q |
170 |
atgttaagcttttagtttgcttttgtagaaattgtggtctctaagcatgaggaagaaataagga------------aaggnnnnnnngaaacatgaacta |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
42740768 |
atgttaagcttttagtttgcttttgtagaaattgtggtctctaagcatgaggaagaaataaggagaaggaataaggaaaggaaaaaagaaacatgaacta |
42740669 |
T |
|
| Q |
258 |
cagtagaacgaaagagaaagtttgttagcggcgacttaggaaatattaccaacaaatgtgatacaaagtcatacaacaactaatttatatctagggttgg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42740668 |
cagtagaacgaaagagaaagtttgttagcggcgacttaggaaatattactaacaaatgtgatacaa-gtcatacaacaactaatttatatctagggttgg |
42740570 |
T |
|
| Q |
358 |
atactttgatttggacttggtcccaatgagtcaactaaatggattaatatctagggttgcattaaaatatgaaaattaataaaatctttagaggtttttc |
457 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42740569 |
atactttgatttggacttgggcccaatgagtcaattaaatggattaatatctagggttgcattaaaatatgaaaattaataaaatctttagaggtttttc |
42740470 |
T |
|
| Q |
458 |
ttgatttatcttcatatttatttattcattaaccggttcaataatggttcataacggtttaaccggttgaactgatttaaccataaaccgaaggtctcat |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
42740469 |
ttgatttatcttcatatttatttattcattaaccggttcaataatggttcataacggtttaatcggttgaaccgattgaaccatgaaccgaaggtctcat |
42740370 |
T |
|
| Q |
558 |
cggttcaatct |
568 |
Q |
| |
|
||||||||||| |
|
|
| T |
42740369 |
cggttcaatct |
42740359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 328 - 571
Target Start/End: Complemental strand, 21744809 - 21744565
Alignment:
| Q |
328 |
atacaacaact--aatttatatctagggttggatactttgatttggacttggtcccaatgagtcaactaaatggattaatatctagggttgcattaaaat |
425 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21744809 |
atacaacaactgtaatttatatctagggttggatactttgatttggactaggggccaatgagtcaactaaatggattaatatctagggttgcattaaaat |
21744710 |
T |
|
| Q |
426 |
atgaaaattaataaaatctttagaggtttttcttgatttatcttcatatttatttattcattaaccggttcaataatggttcataacggtttaaccggtt |
525 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21744709 |
atgaaaattaataaaatcttta-aggtttttcttgatttatcttcatatttatttattcattaaccggttcaataatggttcataacggtttaaccggtt |
21744611 |
T |
|
| Q |
526 |
gaactgatttaaccataaaccgaaggtctcatcggttcaatctctg |
571 |
Q |
| |
|
|||| |||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
21744610 |
gaaccgattgaaccatgaaccgaagatctcatcggttcaatctctg |
21744565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 21745014 - 21744851
Alignment:
| Q |
70 |
gttatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtgtg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21745014 |
gttatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtggg |
21744915 |
T |
|
| Q |
170 |
atgttaagcttttagtttgcttttgtagaaattgtggtctctaagcatgaggaagaaataagga |
233 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21744914 |
atgttaagcttttaatttgcttttgtagaaattgtggtctctaagcatgaggaagaaataagga |
21744851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 180921 - 181025
Alignment:
| Q |
72 |
tatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtgtgat |
171 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
180921 |
tatatactgcttctggagttttttctgttctactgagccagtttaaagtacttgaaaatgaacttgctttgcgctggataccgagtggaacgagtgtgat |
181020 |
T |
|
| Q |
172 |
gttaa |
176 |
Q |
| |
|
||||| |
|
|
| T |
181021 |
gttaa |
181025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 6960370 - 6960271
Alignment:
| Q |
77 |
actgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtgtgatgttaa |
176 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6960370 |
actgcttctggtgttttttctgtccgactaagccagtttaaagtacttgaaaatgaacttgctttgcgctggataccgagtggaatgagtgtgatgttaa |
6960271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 6967800 - 6967701
Alignment:
| Q |
77 |
actgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtgtgatgttaa |
176 |
Q |
| |
|
|||| |||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |
|
|
| T |
6967800 |
actgtttctggtgttttttctatttgactgagccatcttaaagtacttgaaaatgaacttgctttttgctggatactgagtggaatgaatgtgatgttaa |
6967701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 519 - 571
Target Start/End: Original strand, 20218029 - 20218081
Alignment:
| Q |
519 |
accggttgaactgatttaaccataaaccgaaggtctcatcggttcaatctctg |
571 |
Q |
| |
|
||||||| ||| | || |||||| |||||||||||||| |||||||||||||| |
|
|
| T |
20218029 |
accggttcaaccggttgaaccatgaaccgaaggtctcaccggttcaatctctg |
20218081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 644 times since January 2019
Visitors: 6130