View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_40 (Length: 327)
Name: NF0844_low_40
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 36 - 272
Target Start/End: Original strand, 25084454 - 25084690
Alignment:
| Q |
36 |
aaaggttattacatgttgatcttgatttgtgcctcattgatgggaggattactgagaaatataattcgagtcttgtctgatagactctgccaatcattac |
135 |
Q |
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| T |
25084454 |
aaaggttattacatgttgatcttgatttgtgcctcattgatgggaggattactgagcaatataattcgagtcttgtctgatagactctgccaatcattac |
25084553 |
T |
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| Q |
136 |
gaattatgtcaaaattgacattcataaatattttttaaacagcaaaaacaaaattaacattgataaatatgagatgaaaactaaatttcatacacaaatg |
235 |
Q |
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| T |
25084554 |
gaattatgtcaaaattgacattcataaatattttttgaatagtaaaaacaaaattaacattgataaatatgagatgaaaactaaatttcatacacaaatg |
25084653 |
T |
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| Q |
236 |
acacaagaatttcataaagtatgaaacacaattatta |
272 |
Q |
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| T |
25084654 |
acacaagaatttcataaagtatgaaacacaattatta |
25084690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 25062821 - 25062948
Alignment:
| Q |
35 |
caaaggttattacatgttgat-cttgatttgtgcctcattgatgggaggattactgagaaatataattcgagtcttgtctgatagactctgccaatcatt |
133 |
Q |
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||||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || | |||||| ||||| |||| ||| |
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| T |
25062821 |
caaaggttattacatgt-gatgcttcatttgtgcctcattgattggaggattactgagaaatataatacgagttttctgtgataggctctgtcaattatt |
25062919 |
T |
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| Q |
134 |
acgaattatgtcaaaattgacattcataa |
162 |
Q |
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| T |
25062920 |
aggaattatgtcaaaattaacattcataa |
25062948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 25090716 - 25090844
Alignment:
| Q |
35 |
caaaggttattacatgttgatcttgatttgtgcctcattgatgggaggattactgagaaatataattcgagtcttgtctgatagactctgccaatcatta |
134 |
Q |
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| T |
25090716 |
caaaagttattacatgttgaactttaattgtgcctcactgatgggaggactactgagaaatataatccgaatcttgtgtgacaggctctgttaattatta |
25090815 |
T |
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| Q |
135 |
cgaattatgtcaaaattgacattcataaa |
163 |
Q |
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| T |
25090816 |
caaattatgtcaagattaacattcataaa |
25090844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 25071524 - 25071645
Alignment:
| Q |
38 |
aggttattacatgttgatcttgatttgtgcctcattgatgggaggattactgagaaatataattcgagtcttgtctgatagactctgccaatcattacga |
137 |
Q |
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| T |
25071524 |
aggttattacatgttgtgcttcatttgtgcctcattgattggaggattactgagaagtataatccgagttttctgtgacaggctctatccatcattagga |
25071623 |
T |
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| Q |
138 |
attatgtcaaaattgacattca |
159 |
Q |
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| T |
25071624 |
attatgtcgaaattaacattca |
25071645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 25071701 - 25071764
Alignment:
| Q |
200 |
aaatatgagatgaaaactaaatttcatacacaaatgacacaagaatttcataaagtatgaaaca |
263 |
Q |
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| T |
25071701 |
aaatatcagacgaaaacttaattttatacacaaagtacacaagaatttcatgaagtaggaaaca |
25071764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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