View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_44 (Length: 318)
Name: NF0844_low_44
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 17895599 - 17895452
Alignment:
| Q |
1 |
ccaggagctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatcccatgattgtaagagcggtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17895599 |
ccaggagctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatccagtgattgtaagagcggtg |
17895500 |
T |
|
| Q |
101 |
tagcgtcgacatttgtttgatcatattgacatgaaggattattgtata |
148 |
Q |
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| T |
17895499 |
tagcgtcgacatttgtttgatcatattgacatgaagggttattgtata |
17895452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 17846918 - 17846703
Alignment:
| Q |
3 |
aggagctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatcccatgattgtaagagcggtgta |
102 |
Q |
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||||||||||||||||||||||||||||||| ||||||| || || | |||| | || | || |||||| ||| |||||||||||||||| |||| |
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| T |
17846918 |
aggagctgcatcaggtgctgctggtagtcccatgaaaacggtatta---tttggtaaagctaaagatgtccaatcattccatgattgtaagagcaatgta |
17846822 |
T |
|
| Q |
103 |
gcgtcgacatttgtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaaacaagccagttttgatagctttgtcaaggtagt |
202 |
Q |
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| T |
17846821 |
gcatctgagtttattatatcatattgacatggaggattattgtagaattgaacaagtatataatcaaacaagccagttttgatagctttgtcaaggtagt |
17846722 |
T |
|
| Q |
203 |
aatctggaatagaacattg |
221 |
Q |
| |
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|||||| ||| ||||||| |
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| T |
17846721 |
gatctggcataaaacattg |
17846703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 17819519 - 17819731
Alignment:
| Q |
6 |
agctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatcccatgattgtaagagcggtgtagcg |
105 |
Q |
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|||||||||||||| ||||||||||||| |||||| || || | |||| ||||||| || |||||||||| |||||||| |||||| |||||| |
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| T |
17819519 |
agctgcatcaggtgatgctggtagtcccatgaaaacagtatta---tttggtagaactgaagatgtccaagcattccatgattttaagaggtctgtagca |
17819615 |
T |
|
| Q |
106 |
tcgacatttgtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaaacaagccagttttgatagctttgtcaaggtagtaat |
205 |
Q |
| |
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|| ||| |||||||||||||||||| || |||| ||| |||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17819616 |
tctgagtttatttgatcatattgacatggagtgttatggtagaattgaacaagtatataatcaaacaagccagttttgatagctttgtcaaggtagtaat |
17819715 |
T |
|
| Q |
206 |
ctggaatagaacattg |
221 |
Q |
| |
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|||| |||| |||||| |
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| T |
17819716 |
ctggcataggacattg |
17819731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 17859913 - 17860113
Alignment:
| Q |
6 |
agctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatcccatgattgtaagagcggtgtagcg |
105 |
Q |
| |
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|||||||||||||| ||||||||||||| ||||||| || || | |||| ||||||| || |||||| ||| |||||||| |||||| |||||| |
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| T |
17859913 |
agctgcatcaggtgatgctggtagtcccatgaaaacggtatta---tttggtagaactgaagatgtccaatcattccatgattttaagaggtctgtagca |
17860009 |
T |
|
| Q |
106 |
tcgacatttgtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaaacaagccagttttgatagctttgtcaaggtagtaat |
205 |
Q |
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|| |||||| ||||| ||||||||||||||| |||||||| |||| |||| || ||||| ||||||||||||||| ||||||||||||||||||| || |
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| T |
17860010 |
tccccatttgcttgattatattgacatgaagggttattgtagaattgaacaagtacataatcaaacaagccagttttaatagctttgtcaaggtagtgat |
17860109 |
T |
|
| Q |
206 |
ctgg |
209 |
Q |
| |
|
|||| |
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|
| T |
17860110 |
ctgg |
17860113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 17887184 - 17886969
Alignment:
| Q |
3 |
aggagctgcatcaggtgctgctggtagtccccagaaaacgatactaagttctggtggaactgacgacgtccaagcatcccatgattgtaagagcggtgta |
102 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||||| || || | |||| || || | || |||||||||| |||||||||||||||| |||| |
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| T |
17887184 |
aggagctgcattaggtgctgctggtagtcccatgaaaacggtatta---tttggtagagctaaagatgtccaagcattccatgattgtaagagcaatgta |
17887088 |
T |
|
| Q |
103 |
gcgtcgacatttgtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaaacaagccagttttgatagctttgtcaaggtagt |
202 |
Q |
| |
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|| || ||| || ||||||||||||||| ||| |||||||| |||| |||| | ||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
17887087 |
gcatctgagtttattagatcatattgacatggagggttattgtagaattgaacaaggacataatcaaataagccagttttgatagctttgtcaaggtagt |
17886988 |
T |
|
| Q |
203 |
aatctggaatagaacattg |
221 |
Q |
| |
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||||||| ||| ||||||| |
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| T |
17886987 |
aatctggcataaaacattg |
17886969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 17908049 - 17907910
Alignment:
| Q |
70 |
gtccaagcatcccatgattgtaagagcggtgtagcgtcgacatttgtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaa |
169 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||| | ||| |||||||||||||||||| |||||||||||| |||| |||| |||||||| || |
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| T |
17908049 |
gtccaagcattccatgattgtaaaagcaatgtagcatttgagtttatttgatcatattgacatggaggattattgtagaattgaacaagtatataatcaa |
17907950 |
T |
|
| Q |
170 |
acaagccagttttgatagctttgtcaaggtagtaatctgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
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| T |
17907949 |
acaagccagttttgatagctttgtcaaggtagtgatctgg |
17907910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 226
Target Start/End: Complemental strand, 17919319 - 17919205
Alignment:
| Q |
112 |
tttgtttgatcatattgacatgaaggattattgtataatttgacaaatatataattaaacaagccagttttgatagctttgtcaaggtagtaatctggaa |
211 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||| |||| | ||||| ||| |||||| ||||||||||||||||||||| | |||||||| |
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| T |
17919319 |
tttgtttgatcatattgacaattagggttattgtagaatttaacaattgcataatcaaaagagccagatttgatagctttgtcaaggtattgatctggaa |
17919220 |
T |
|
| Q |
212 |
tagaacattgtgatg |
226 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
17919219 |
taatacattgggatg |
17919205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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