View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_48 (Length: 301)
Name: NF0844_low_48
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 9709306 - 9709123
Alignment:
| Q |
68 |
gatgtttcccagcttttaagaacatgaagacgctaaagtgtgaaaaatccgaatcagaaaacagcagccataatgagcacgtatctgcaacaacgcctca |
167 |
Q |
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| T |
9709306 |
gatgtttcccagcttttaagaacatgaagacgctaaagtgtgaaaaatccgaatcagaaaacagcagccataatgagcacgtatctgcaacaacgcctca |
9709207 |
T |
|
| Q |
168 |
acttcaagcttctcgctcgttgcactctgagcctcgaagttctatggctagtatgaaatcctttaaccgagttgccagcaacag |
251 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
9709206 |
acttcaagcttctcgctcgttgcactctgatcctcgaagttctatggctagtatgaaatcccttaaccgagttgccaacaacag |
9709123 |
T |
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