View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_49 (Length: 298)
Name: NF0844_low_49
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 43616909 - 43616695
Alignment:
| Q |
1 |
aaaattatcgataacgcagagaattcataatgtaacacaaatgttttcatcattctagaccttataccgcaaattgaaattaaattaatggtacctgaag |
100 |
Q |
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| T |
43616909 |
aaaattatccatgacgcagagaattcataatgtaacacaaatgttttcatcattctagaccttataccacaaattgaaattaaattaatggtacctgaag |
43616810 |
T |
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| Q |
101 |
tacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgattcatgatattcatgttcttgattg |
200 |
Q |
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| T |
43616809 |
tacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgattcatgatattcatgttcttgattg |
43616710 |
T |
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| Q |
201 |
ttgtgatgatgtcca |
215 |
Q |
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|||||||||| |||| |
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| T |
43616709 |
ttgtgatgatatcca |
43616695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 43610206 - 43610070
Alignment:
| Q |
78 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
177 |
Q |
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|||||||||| || |||||||||||||| |||||| ||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43610206 |
aattaaatta-tgctacctgaagtacaatccacaaactccaggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgatt |
43610108 |
T |
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| Q |
178 |
catgatattcatgttcttgattgttgtgatgatgtcca |
215 |
Q |
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| T |
43610107 |
cactatcttcatgttgttgatagttgtgatgatatcca |
43610070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 43603798 - 43603661
Alignment:
| Q |
78 |
aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgatt |
177 |
Q |
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|||||||| || |||||||||| ||||| |||||| |||||||||| ||| ||||||||||||| |||| |||||||||||||||||| |||| ||||| |
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| T |
43603798 |
aattaaataaacggtacctgaaatacaatccacaaactccacatgactgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgatt |
43603699 |
T |
|
| Q |
178 |
catgatattcatgttcttgattgttgtgatgatgtcca |
215 |
Q |
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|| || || ||||| ||||| ||||||||||| |||| |
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| T |
43603698 |
cactatctttatgttgttgatagttgtgatgatatcca |
43603661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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