View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844_low_51 (Length: 294)

Name: NF0844_low_51
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844_low_51
NF0844_low_51
[»] chr7 (1 HSPs)
chr7 (225-289)||(322245-322309)
[»] chr6 (2 HSPs)
chr6 (242-290)||(19810982-19811030)
chr6 (246-290)||(32687273-32687317)
[»] chr3 (1 HSPs)
chr3 (242-290)||(1199457-1199505)
[»] chr8 (1 HSPs)
chr8 (242-289)||(18295497-18295544)
[»] chr2 (1 HSPs)
chr2 (242-290)||(25207811-25207859)
[»] chr1 (1 HSPs)
chr1 (246-290)||(26941971-26942015)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 322309 - 322245
Alignment:
Q  225 tcatgctgtgaactataatattgcctgacatttctccgcttacgcctcaatgactggtactgagt 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  322309 tcatgctgtgaactataatattgcctgacatttctccgcttacgcctcaatgactggtactgagt 322245  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 19810982 - 19811030
Alignment:
Q  242 atattgcctgacatttctccgcttacgcctcaatgactggtactgagtg 290  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19810982 atattgcctgacatttctccgcttacgcctcaacgactggtactgagtg 19811030  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 32687273 - 32687317
Alignment:
Q  246 tgcctgacatttctccgcttacgcctcaatgactggtactgagtg 290  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  32687273 tgcctgacatttctccgcttacgcctcaacgactggtactgagtg 32687317  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 1199457 - 1199505
Alignment:
Q  242 atattgcctgacatttctccgcttacgcctcaatgactggtactgagtg 290  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1199457 atattgcctgacatttctccgcttacgcctcaacgactggtactgagtg 1199505  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 18295497 - 18295544
Alignment:
Q  242 atattgcctgacatttctccgcttacgcctcaatgactggtactgagt 289  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  18295497 atattgcctgacctttctccgcttacgcctcaatgacttgtactgagt 18295544  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 25207859 - 25207811
Alignment:
Q  242 atattgcctgacatttctccgcttacgcctcaatgactggtactgagtg 290  Q
    |||||||||||||||||||||||||||| |||| ||||| |||||||||    
T  25207859 atattgcctgacatttctccgcttacgcttcaacgactgatactgagtg 25207811  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 26942015 - 26941971
Alignment:
Q  246 tgcctgacatttctccgcttacgcctcaatgactggtactgagtg 290  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  26942015 tgcctgacatttctccgcttacgcatcaacgactggtactgagtg 26941971  T

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