View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844_low_52 (Length: 292)

Name: NF0844_low_52
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844_low_52
NF0844_low_52
[»] chr6 (10 HSPs)
chr6 (34-292)||(30958580-30958838)
chr6 (38-292)||(31012389-31012646)
chr6 (73-292)||(15523175-15523394)
chr6 (164-292)||(31001966-31002091)
chr6 (183-288)||(30663988-30664093)
chr6 (164-288)||(31221752-31221876)
chr6 (228-292)||(15493361-15493425)
chr6 (38-108)||(15493062-15493132)
chr6 (36-108)||(31001838-31001910)
chr6 (149-181)||(30943437-30943469)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 34 - 292
Target Start/End: Original strand, 30958580 - 30958838
Alignment:
Q  34 gcagagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatc 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||| |    
T  30958580 gcagagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtctttctccttgtggagctggtaaacc 30958679  T
Q  134 atttcatctttactgccataacaaccaaaatactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaa 233  Q
    |||| | ||| ||||  |  | ||  | |  ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |||    
T  30958680 attttaccttaactgtaaggaaaataacatcactaccattctgttatcctcacaaaatttaacagtacttgacatcaacatagaaacacacaccatgaaa 30958779  T
Q  234 ctcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttattt 292  Q
    || ||||||||||||||| |||||||||| ||||||||||||||| || ||||||||||    
T  30958780 ctaaaaagaacagaccttgatcaaaatctttgttctcctcaatataattatacttattt 30958838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 31012389 - 31012646
Alignment:
Q  38 agacatcaaaaacttctacaactgcggaagaatca---ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatca 134  Q
    ||||||||||||||  |||| ||||||||| || |   |||||||||||||||| ||||||||| ||||||||| ||  |  ||||||||||| ||  |     
T  31012389 agacatcaaaaactcttacagctgcggaagtattatctccaacatctcttatccattctggggagaaaatcgtccttttcattgtggtgctggcaacccg 31012488  T
Q  135 tttcatctttactgccataacaaccaaaatactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaac 234  Q
    | ||| ||||||||||| || ||| || ||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  31012489 tatcacctttactgccacaataacaaagatactaccattttgttatactcacaaaaattcacagtacttgacatcaacatagaaaaacacaccatgaaac 31012588  T
Q  235 tcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttattt 292  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||    
T  31012589 tcaaaagaacagaccttgatcaaaatctttgttctcctcaatataatgatacttattt 31012646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 292
Target Start/End: Complemental strand, 15523394 - 15523175
Alignment:
Q  73 ccaacatctcttatccgttctggggacaaaatcgtcattcgccatgtggtgctggtaaatcatttcatctttactgccataacaaccaaaatactaccat 172  Q
    |||||||||||||||| || |||||||||||||||| ||  | |||||| ||||| ||  | ||| | ||| ||||||| |||||| | |  || |||||    
T  15523394 ccaacatctcttatccattttggggacaaaatcgtccttttcaatgtggggctggcaaccctttttaccttaactgccacaacaacaacaccaccaccat 15523295  T
Q  173 tctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcct 272  Q
    ||| ||||| ||||||||||||||||||||||| || ||||   || | |||| ||||||||||||||||||||||||| |||||||||| |||||||||    
T  15523294 tctcttatcctcacaaaatttcacagtacttgatataaacagcaaagaccacatcatcaaactcaaaagaacagaccttgatcaaaatctatgttctcct 15523195  T
Q  273 caatatgatgatacttattt 292  Q
     ||| | |||||||||||||    
T  15523194 aaatttaatgatacttattt 15523175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 292
Target Start/End: Original strand, 31001966 - 31002091
Alignment:
Q  164 tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc 263  Q
    ||||||||||||| |||| |||||||||||||| |||||||| ||||||| | |||| |||||||| ||||| ||||||||||||||   |||||||||     
T  31001966 tactaccattctgatatcctcacaaaatttcactgtacttgaaatcaacacaaaaaatcacaccatgaaacttaaaagaacagacct---tcaaaatctt 31002062  T
Q  264 tgttctcctcaatatgatgatacttattt 292  Q
    ||||||||| | | || ||||||||||||    
T  31002063 tgttctcctaagtttgttgatacttattt 31002091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 288
Target Start/End: Complemental strand, 30664093 - 30663988
Alignment:
Q  183 tcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatg 282  Q
    |||||||||||||  |||||| | || |||| |  ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  30664093 tcacaaaatttcaacgtacttcaaataaacacaacaaatcacatcatcaaactcaaaagaacagaccttgatcaaaatctttgttctcctcaatttgatg 30663994  T
Q  283 atactt 288  Q
    ||||||    
T  30663993 atactt 30663988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 31221752 - 31221876
Alignment:
Q  164 tactaccattctgttatcgtcacaaaatttcacagtacttgacatcaacatagaaaaacacaccatcaaactcaaaagaacagaccttcatcaaaatctc 263  Q
    |||||||||||| ||||| ||||||||||||||||||||||| || |||  | |||  |||||||||||||| || ||||||||||||   |||||| |     
T  31221752 tactaccattctattatcatcacaaaatttcacagtacttgatattaactcacaaattcacaccatcaaacttaagagaacagacctttcccaaaatttt 31221851  T
Q  264 tgttctcctcaatatgatgatactt 288  Q
    ||||||||||||||  |||||||||    
T  31221852 tgttctcctcaatacaatgatactt 31221876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 15493361 - 15493425
Alignment:
Q  228 atcaaactcaaaagaacagaccttcatcaaaatctctgttctcctcaatatgatgatacttattt 292  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||||    
T  15493361 atcaaactcaaaagaacagaccttgatcaaaatctatgttctcctcaatttcatgatacttattt 15493425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 15493062 - 15493132
Alignment:
Q  38 agacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtc 108  Q
    ||||||||| |||| ||||||||| ||||  ||| |||||||||||||||| ||||||||||||| |||||    
T  15493062 agacatcaagaactcctacaactgtggaaatatctccaacatctcttatccattctggggacaaagtcgtc 15493132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 31001838 - 31001910
Alignment:
Q  36 agagacatcaaaaacttctacaactgcggaagaatcaccaacatctcttatccgttctggggacaaaatcgtc 108  Q
    |||||||| ||||| | ||| ||||| ||||   ||||||||||||||||||| ||||||||| |||||||||    
T  31001838 agagacataaaaaattcctataactgtggaaatctcaccaacatctcttatccattctggggaaaaaatcgtc 31001910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 30943437 - 30943469
Alignment:
Q  149 ccataacaaccaaaatactaccattctgttatc 181  Q
    ||||||||||||||| |||||||||||||||||    
T  30943437 ccataacaaccaaaacactaccattctgttatc 30943469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 16593 times since January 2019
Visitors: 1282