View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844_low_53 (Length: 292)

Name: NF0844_low_53
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844_low_53
NF0844_low_53
[»] chr1 (10 HSPs)
chr1 (60-244)||(6690849-6691032)
chr1 (60-140)||(46284868-46284949)
chr1 (60-125)||(29859030-29859096)
chr1 (164-244)||(46284942-46285021)
chr1 (60-125)||(21790864-21790930)
chr1 (72-138)||(21791346-21791412)
chr1 (60-131)||(16959997-16960068)
chr1 (60-131)||(44233321-44233393)
chr1 (60-138)||(29859527-29859606)
chr1 (61-138)||(5216674-5216752)
[»] chr3 (8 HSPs)
chr3 (60-140)||(51827676-51827757)
chr3 (61-140)||(30833785-30833864)
chr3 (63-140)||(28908003-28908080)
chr3 (161-244)||(51827747-51827830)
chr3 (161-244)||(28908070-28908153)
chr3 (161-244)||(30833854-30833937)
chr3 (72-131)||(38798377-38798437)
chr3 (60-131)||(41710067-41710138)
[»] chr2 (8 HSPs)
chr2 (60-139)||(4776871-4776951)
chr2 (60-140)||(121418-121498)
chr2 (161-213)||(4776828-4776880)
chr2 (60-131)||(19386409-19386480)
chr2 (89-140)||(38956577-38956628)
chr2 (81-131)||(42848853-42848903)
chr2 (72-131)||(8911707-8911767)
chr2 (72-131)||(20203170-20203230)
[»] scaffold0155 (1 HSPs)
scaffold0155 (60-140)||(1643-1723)
[»] chr5 (1 HSPs)
chr5 (60-140)||(42519754-42519834)
[»] chr4 (5 HSPs)
chr4 (60-139)||(52363115-52363195)
chr4 (161-244)||(52363186-52363268)
chr4 (60-125)||(42883344-42883410)
chr4 (60-131)||(21825018-21825089)
chr4 (81-129)||(4157907-4157955)
[»] chr8 (5 HSPs)
chr8 (60-140)||(25128700-25128779)
chr8 (60-125)||(36731960-36732026)
chr8 (60-122)||(25191388-25191451)
chr8 (161-206)||(5881316-5881362)
chr8 (63-140)||(5881249-5881326)
[»] chr6 (5 HSPs)
chr6 (60-125)||(19653740-19653806)
chr6 (81-131)||(18153392-18153442)
chr6 (72-138)||(32907552-32907618)
chr6 (60-131)||(8993455-8993526)
chr6 (60-131)||(9017902-9017973)
[»] chr7 (7 HSPs)
chr7 (60-131)||(26774108-26774180)
chr7 (60-131)||(43334597-43334668)
chr7 (63-131)||(3163368-3163436)
chr7 (60-131)||(30469971-30470042)
chr7 (60-131)||(46427989-46428060)
chr7 (60-131)||(3475016-3475087)
chr7 (72-131)||(30660379-30660439)
[»] scaffold0853 (1 HSPs)
scaffold0853 (81-131)||(2194-2244)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 6691032 - 6690849
Alignment:
Q  60 atcaaatgattcaaattttaatttagaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatagnnnnnnnngaaggnnnnnn 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||        |||||          
T  6691032 atcaaatgattcaaattttaatttagaaataaaatattctttcttctc-tggttaattattttccaaatattatatgatagttttttttgaaggaaaaaa 6690934  T
Q  160 nttatatgacagtattattatggtttctttacggtttacactattcaccgtcatcnnnnnnnataggcttatcatccttatttct 244  Q
     |||||||| | |||||||||||||||||||||||||||||| ||||| ||||||       | |||||||||||||||||||||    
T  6690933 attatatgataatattattatggtttctttacggtttacactgttcactgtcatctttttttacaggcttatcatccttatttct 6690849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 46284868 - 46284949
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  46284868 atcaaatgatgcaaattttaattttagaaataaaatattctttcttctcttggttaattatttaccaaaaattttatgatag 46284949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 29859030 - 29859096
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttacca 125  Q
    ||||||||| |||||||||||||| ||||||||  |||||||||||||||| |||||||| ||||||    
T  29859030 atcaaatgagtcaaattttaattttagaaataatttattctttcttctcttagttaattacttacca 29859096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 46284942 - 46285021
Alignment:
Q  164 tatgacagtattattatggtttctttacggtttacactattcaccgtcatcnnnnnnnataggcttatcatccttatttct 244  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||| ||||||       | |||||||||||||||||||||    
T  46284942 tatgatagtattattatgctttctttacagtttacactattcactgtcatcttttttaa-aggcttatcatccttatttct 46285021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 21790864 - 21790930
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttacca 125  Q
    |||||||||  ||||||||||||| ||||||||   |||||||||||||||||||||||| ||||||    
T  21790864 atcaaatgagccaaattttaattttagaaataattaattctttcttctcttggttaattacttacca 21790930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 21791412 - 21791346
Alignment:
Q  72 aaattttaatttagaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgat 138  Q
    |||||| | |||||||||||  ||||||||||| | ||| ||||||||| |||||||||||||||||    
T  21791412 aaatttaattttagaaataatttattctttcttgtgttgattaattattcaccaaaaattatatgat 21791346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 16960068 - 16959997
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    ||||||| || ||||||||||||| ||||| ||  | ||||||||||||||| ||||||||||||||||||||    
T  16960068 atcaaattatccaaattttaattttagaaacaattt-ttctttcttctcttgattaattatttaccaaaaatt 16959997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 44233321 - 44233393
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||| ||||||||||||| | ||||||  |||| ||| |||||||| ||||| ||||||||||||||    
T  44233321 atcaaatgatccaaattttaattttaaaaataatttattatttattctcttgattaatcatttaccaaaaatt 44233393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 29859606 - 29859527
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgat 138  Q
    |||||||||  ||||||||||||| | ||||||  ||||||||||| | ||| ||||||||| |||||||||| ||||||    
T  29859606 atcaaatgagacaaattttaattttaaaaataatttattctttcttgttttgattaattattcaccaaaaattctatgat 29859527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 5216674 - 5216752
Alignment:
Q  61 tcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgat 138  Q
    |||||| ||||||| |||||||| ||||||||  |||| |||||| | ||| ||||||||| ||| |||||||||||||    
T  5216674 tcaaataattcaaaatttaattttagaaataatttattatttcttgtgttgattaattattcacccaaaattatatgat 5216752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 51827676 - 51827757
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51827676 atcaaatgatgcaaattttaattttagaaataaaatattctatcttctcttggttaattatttaccaaaaattatatgatag 51827757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 140
Target Start/End: Original strand, 30833785 - 30833864
Alignment:
Q  61 tcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30833785 tcaaatgatgcaaattttaattttagaaataaaatat-ctttcttctcttggttaattatttaccaaaaattatatgatag 30833864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 28908003 - 28908080
Alignment:
Q  63 aaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||    
T  28908003 aaatgatgcaaattttaattttagaaataaaatat-ctttcttctcttagttagttatttaccaaaaattatatgatag 28908080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 51827747 - 51827830
Alignment:
Q  161 ttatatgacagtattattatggtttctttacggtttacactattcaccgtcatcnnnnnnnataggcttatcatccttatttct 244  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||       | |||||||||||| ||||||||    
T  51827747 ttatatgatagtattattatggtttctttacggtttacactattcactgtcatctttttttaaaggcttatcatcattatttct 51827830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 28908070 - 28908153
Alignment:
Q  161 ttatatgacagtattattatggtttctttacggtttacactattcaccgtcatcnnnnnnnataggcttatcatccttatttct 244  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||| |||||        | |||||||||||||||||||||    
T  28908070 ttatatgatagtattattatggtttctttacagtttacactattcactgtcatttttttttaaaggcttatcatccttatttct 28908153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 30833854 - 30833937
Alignment:
Q  161 ttatatgacagtattattatggtttctttacggtttacactattcaccgtcatcnnnnnnnataggcttatcatccttatttct 244  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||| ||||||       | ||| |||||||||||||||||    
T  30833854 ttatatgatagtattattatggtttcttcacagtttacactattcactgtcatctttttttaaaggtttatcatccttatttct 30833937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 38798377 - 38798437
Alignment:
Q  72 aaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||||| ||||| ||  ||||||||||| | ||| ||||||||||||||||||||    
T  38798377 aaattttaattttagaaacaatttattctttctttttttgattaattatttaccaaaaatt 38798437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 41710138 - 41710067
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    ||||||||||  |||||||||||| ||||| ||  ||||||||||| | ||| ||||||||||||||||||||    
T  41710138 atcaaatgatctaaattttaattttagaaacaatttattctttctttt-ttgattaattatttaccaaaaatt 41710067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 4776951 - 4776871
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgata 139  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4776951 atcaaatgatgcaaattttaattttagaaataaaatattctttcttcgcttggttaattatttaccaaaaattatatgata 4776871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 121418 - 121498
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  121418 atcaaatgatgcaaattttaattttagaaataaaatattctttcttctcttggttaattatttacc-aaaattatatgatag 121498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 4776880 - 4776828
Alignment:
Q  161 ttatatgacagtattattatggtttctttacggtttacactattcaccgtcat 213  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  4776880 ttatatgataatattattatggtttctttacggtttacactattcactgtcat 4776828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 19386409 - 19386480
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||| ||||||||||||| ||||| ||  | ||||||||||||||| |||||||||||| |||||||    
T  19386409 atcaaatgatccaaattttaattttagaaacaattt-ttctttcttctcttgattaattatttactaaaaatt 19386480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 38956628 - 38956577
Alignment:
Q  89 taaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    |||||| ||||| ||||||||  |||||||||||||||||||||| ||||||    
T  38956628 taaaattttcttccttctcttcattaattatttaccaaaaattatttgatag 38956577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 42848853 - 42848903
Alignment:
Q  81 tttagaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||||  ||||||||||||| |||||||||| ||| |||||||||    
T  42848853 tttagaaataatttattctttcttcttttggttaattcttttccaaaaatt 42848903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 8911767 - 8911707
Alignment:
Q  72 aaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||||| ||||| ||  ||||||||||| | ||| ||||||||||||||||||||    
T  8911767 aaattttaattttagaaacaatttattctttctttttttgattaattatttaccaaaaatt 8911707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 20203230 - 20203170
Alignment:
Q  72 aaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||||| ||||| ||  ||||||||||| | ||| ||||||||||||||||||||    
T  20203230 aaattttaattttagaaacaatttattctttctttttttgattaattatttaccaaaaatt 20203170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 1723 - 1643
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1723 atcaaatgatgcaaattttaattttagaaataaaatattctttcttctcttggttaattatttacc-aaaattatatgatag 1643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 42519754 - 42519834
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42519754 atcaaatgatgcaaattttaattttagaaataaaatattctttcttctcttggttaattatttacc-aaaattatatgatag 42519834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 52363115 - 52363195
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgata 139  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||    
T  52363115 atcaaatgatgcaaattttaattttagaaataaaatattctttcatctattggttaattatttatcaaaaattatatgata 52363195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 52363186 - 52363268
Alignment:
Q  161 ttatatgacagtattattatggtttctttacggtttacactattcaccgtcatcnnnnnnnataggcttatcatccttatttct 244  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| ||||||       | |||||||||||||||||||||    
T  52363186 ttatatgatattattattatggtttctttacggtttacactattcactgtcatcttttttaa-aggcttatcatccttatttct 52363268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 42883410 - 42883344
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttacca 125  Q
    |||||||||||||||||||||||| | ||||||  |||||||||||||||| ||||| |||||||||    
T  42883410 atcaaatgattcaaattttaattttataaataatttattctttcttctcttagttaactatttacca 42883344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 21825089 - 21825018
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||| ||||||||||||| ||||| ||  | ||||||||||||||| ||||| ||||||||||||||    
T  21825089 atcaaatgatccaaattttaattttagaaacaattt-ttctttcttctcttgattaatcatttaccaaaaatt 21825018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 4157907 - 4157955
Alignment:
Q  81 tttagaaataaaatattctttcttctcttggttaattatttaccaaaaa 129  Q
    |||||||||||  |||||||||||||||| |||||||| || |||||||    
T  4157907 tttagaaataatttattctttcttctcttcgttaattactttccaaaaa 4157955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 25128700 - 25128779
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  25128700 atcatatgatgcaaattttaattttagaaataaaatattctttcttctcttggttaattatttacc--aaattatatgatag 25128779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 36732026 - 36731960
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttacca 125  Q
    |||||||||  ||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  36732026 atcaaatgagccaaattttaattttagaaataatttattctttcttctcttggttaattacttacca 36731960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 25191451 - 25191388
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattattta 122  Q
    ||||| |||||||||||||||||| ||||||||  |||||||||||||||| ||||| ||||||    
T  25191451 atcaactgattcaaattttaattttagaaataatttattctttcttctcttagttaactattta 25191388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 5881316 - 5881362
Alignment:
Q  161 ttatatgacagtattattatggtttctttacggttt-acactattca 206  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  5881316 ttatatgatagtattattatggtttctttacggtttaacactattca 5881362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 5881249 - 5881326
Alignment:
Q  63 aaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgatag 140  Q
    ||||||| |||| |||||||| ||||||||  ||||||||||| |||||||| |||| || || |||||||||||||||    
T  5881249 aaatgatccaaactttaattttagaaataatgtattctttcttttcttggttgattagtt-cccaaaattatatgatag 5881326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 19653806 - 19653740
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttacca 125  Q
    |||||||||| ||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  19653806 atcaaatgatccaaattttaattttagaaataatttattctttcttctcttggttaattacttacca 19653740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 18153392 - 18153442
Alignment:
Q  81 tttagaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    ||||||||||  |||||||||||||||||| ||||||| || |||||||||    
T  18153392 tttagaaatactatattctttcttctcttgcttaattactttccaaaaatt 18153442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 32907552 - 32907618
Alignment:
Q  72 aaattttaatttagaaataaaatattctttcttctcttggttaattatttaccaaaaattatatgat 138  Q
    |||||| | |||||||||||  ||||||||||| | ||| ||||||||| |||||||||| ||||||    
T  32907552 aaatttaattttagaaataatttattctttcttgttttgattaattattcaccaaaaattctatgat 32907618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 8993526 - 8993455
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    ||||||||||  |||||||||||| ||||| ||  ||||||||||| | ||| ||||||||||||||||||||    
T  8993526 atcaaatgatctaaattttaattttagaaacaatttattctttctttt-ttgattaattatttaccaaaaatt 8993455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 9017973 - 9017902
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    ||||||||||  |||||||||||| ||||| ||  ||||||||||| | ||| ||||||||||||||||||||    
T  9017973 atcaaatgatctaaattttaattttagaaacaatttattctttctttt-ttgattaattatttaccaaaaatt 9017902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 26774108 - 26774180
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    ||||||||||  |||||||||||| ||||||||  ||||||||||| | ||| ||||||||||||||||||||    
T  26774108 atcaaatgatctaaattttaattttagaaataatttattctttctttttttgattaattatttaccaaaaatt 26774180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 43334668 - 43334597
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||| ||||||||||||| ||||| ||  | ||||||||||||||| ||||||||||||||||||||    
T  43334668 atcaaatgatccaaattttaattttagaaacaattt-ttctttcttctcttgattaattatttaccaaaaatt 43334597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 3163436 - 3163368
Alignment:
Q  63 aaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    ||||||| ||||||||||||| ||||| ||  | ||||||||||||||| ||||||||||||||||||||    
T  3163436 aaatgatccaaattttaattttagaaacaattt-ttctttcttctcttgattaattatttaccaaaaatt 3163368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 30470042 - 30469971
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||| ||||||||||||| ||||| ||  | ||||||||||||||| ||||| ||||||||||||||    
T  30470042 atcaaatgatccaaattttaattttagaaacaattt-ttctttcttctcttgattaatcatttaccaaaaatt 30469971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 46428060 - 46427989
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    ||||||||||  |||||||||||| ||||| ||  | ||||||||||||||| ||||||||||||||||||||    
T  46428060 atcaaatgatctaaattttaattttagaaacaattt-ttctttcttctcttgattaattatttaccaaaaatt 46427989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 3475016 - 3475087
Alignment:
Q  60 atcaaatgattcaaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    ||||||||||  |||||||||||| ||||| ||  ||||||||||| | ||| ||||||||||||||||||||    
T  3475016 atcaaatgatctaaattttaattttagaaacaatttattctttctttt-ttgattaattatttaccaaaaatt 3475087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 30660439 - 30660379
Alignment:
Q  72 aaattttaattt-agaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||||| ||||| ||  ||||||||||| | ||| ||||||||||||||||||||    
T  30660439 aaattttaattttagaaacaatttattctttctttttttgattaattatttaccaaaaatt 30660379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 2244 - 2194
Alignment:
Q  81 tttagaaataaaatattctttcttctcttggttaattatttaccaaaaatt 131  Q
    |||||||||||  ||||||||||||| ||||||||||| || |||||||||    
T  2244 tttagaaataatttattctttcttcttttggttaattactttccaaaaatt 2194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2915 times since January 2019
Visitors: 6167