View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_6 (Length: 554)
Name: NF0844_low_6
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 306 - 533
Target Start/End: Complemental strand, 17569156 - 17568933
Alignment:
| Q |
306 |
actaccagcagaagcacatcaccccaccccatattcaaacaatctgcaggatcccaactccatgcgggaaaaaag-tacatgtaggaatcttcaacctac |
404 |
Q |
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| T |
17569156 |
actaccagcagaagcacatcacccca-----tattcaaacaatctgcaggatcccaacttcattcgggaaaaaaaatacatgtaggaatcttcagcctac |
17569062 |
T |
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| Q |
405 |
ttaaactccacctccaagagacaagcttaatctcttcaaaaattgtggaatgccaaataaaccaaaaaccttttcggattttcttaattctcaacccacc |
504 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |||| |
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| T |
17569061 |
ttaaactccaactccaagacacaagcttaatctcttcaaaaattggggaatgccaaataaaccaaaaaccttttcggattttcttacttctctattcacc |
17568962 |
T |
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| Q |
505 |
actcgaacacgtaaaatgtgcaaataaat |
533 |
Q |
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|||| ||||||||||||| |||||||||| |
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| T |
17568961 |
actcaaacacgtaaaatgcgcaaataaat |
17568933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 17569395 - 17569156
Alignment:
| Q |
11 |
acaatattacaaagtgatgtgaaacccctttaacacgcaatgtgtcagctcttaaaaggaagaacgaaacaaagagcctagttg-taaccccaaaaccaa |
109 |
Q |
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|||| |||||||||||| || ||||||||||||||| ||| || |||| |||||| ||||||| ||||||||||||||| || || || ||||||||| |
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| T |
17569395 |
acaaaattacaaagtgaggtaaaacccctttaacacacaaagtaacagcccttaaagagaagaacaaaacaaagagcctagctgctagccgcaaaaccaa |
17569296 |
T |
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| Q |
110 |
ttgacaggcacaacagcagccccaccctagccaaaacaacacatcaacagataagcccctaaatgctaaacagaccccaacaaaaagaaacactgccagc |
209 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| | |
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| T |
17569295 |
ctgacaggcacaacagcagccccacccgagccaaaacaacacatcaacagataaacccctaaatgctaaagagaccccaacaaaaagaaacattgccatc |
17569196 |
T |
|
| Q |
210 |
gaaaagatggcaccactgtagcagagcagcatccgctcaa |
249 |
Q |
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||||||| ||||||| ||||||||||||| ||||||| |
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| T |
17569195 |
gaaaagaacgcaccacaacagcagagcagcattcgctcaa |
17569156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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