View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_60 (Length: 278)
Name: NF0844_low_60
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_60 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 37469516 - 37469779
Alignment:
| Q |
16 |
attgaccgaaaacaaacaggctcaaagaaggcaaggcaaactcgtcc-tttgttgttcagattagggttttggaattaaattcaaggttatgttaatcaa |
114 |
Q |
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| T |
37469516 |
attgaccgaaaacaaacaggctcaaagaaagcaaggcaaactcgtccctttgttgttcagattagggttttggaattaaattcaaggttatgttaatcaa |
37469615 |
T |
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| Q |
115 |
cgcttcctccagaatgaatctcgtctacgatgtgaggcttccttcatcctccagaatgaatctctccaatggcgtgaggcttcgctcatcatctcatccc |
214 |
Q |
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| T |
37469616 |
cgcttcctccagaatgaatctcgcctacagtatgaggcttccttcatcctccagaatgaatctctccaatggcgcgaggcttcgctcatcatctcatccc |
37469715 |
T |
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| Q |
215 |
tgcaaatccgtatgatctatctctctcatccattttattttcggtttaactttttcggtggtga |
278 |
Q |
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| T |
37469716 |
tgcaaatccgtatgatctatctctctcatccattttattttcggtttaactttttcggtggtga |
37469779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 33004154 - 33004035
Alignment:
| Q |
104 |
atgttaatcaacgcttcctccagaatgaatctcgtctacgatgtgaggcttccttcatcctccagaatgaatctctccaatggcgtgaggcttcgctcat |
203 |
Q |
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| T |
33004154 |
atgttaatcaatgcttcctccagaatgaatctctccaatggcttgaggcttccttcatcttccagaatgaatttctccaacggcgtgaggcttcgctcat |
33004055 |
T |
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| Q |
204 |
catctcatccctgcaaatcc |
223 |
Q |
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| T |
33004054 |
catctcatccctgcaaatcc |
33004035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 104 - 223
Target Start/End: Complemental strand, 17595049 - 17594930
Alignment:
| Q |
104 |
atgttaatcaacgcttcctccagaatgaatctcgtctacgatgtgaggcttccttcatcctccagaatgaatctctccaatggcgtgaggcttcgctcat |
203 |
Q |
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|||||||||||||||||||||| ||||||||| || | |||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
17595049 |
atgttaatcaacgcttcctccaagatgaatctctcgtatggcgtgacgcttccttcatcctccagtatgagtctctccaatggcgtgaggcttcgctcat |
17594950 |
T |
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| Q |
204 |
catctcatccctgcaaatcc |
223 |
Q |
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| T |
17594949 |
catctcatctctgcaaatcc |
17594930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 40736145 - 40736070
Alignment:
| Q |
87 |
gaattaaattcaaggttatgttaatcaacgcttcctccagaatgaatctcgtctacgatgtgaggcttccttcatc |
162 |
Q |
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| T |
40736145 |
gaattcaattcaaggttatgttaatcaacgcttactccagaatgaatctctccaatggcgtgaggcttccttcatc |
40736070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 40736111 - 40736068
Alignment:
| Q |
163 |
ctccagaatgaatctctccaatggcgtgaggcttcgctcatcat |
206 |
Q |
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| T |
40736111 |
ctccagaatgaatctctccaatggcgtgaggcttccttcatcat |
40736068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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