View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844_low_66 (Length: 268)

Name: NF0844_low_66
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844_low_66
NF0844_low_66
[»] chr8 (1 HSPs)
chr8 (30-268)||(5440479-5440721)
[»] chr7 (2 HSPs)
chr7 (73-118)||(38223668-38223713)
chr7 (81-110)||(5461680-5461709)
[»] chr3 (2 HSPs)
chr3 (73-114)||(21652849-21652890)
chr3 (80-118)||(24346321-24346359)
[»] chr2 (1 HSPs)
chr2 (73-121)||(27003238-27003286)
[»] chr4 (1 HSPs)
chr4 (99-153)||(2734613-2734667)
[»] chr6 (1 HSPs)
chr6 (73-118)||(34708148-34708193)
[»] chr5 (1 HSPs)
chr5 (75-140)||(2028067-2028132)
[»] chr1 (1 HSPs)
chr1 (74-110)||(3875791-3875827)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 5440479 - 5440721
Alignment:
Q  30 ctttgatggtattttgttcaagtaattttagactaaatcatcattttctcatattattaatgaaggataattttataaaatcatttatacttgctttttc 129  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5440479 ctttgatggtattttgttcaagtaattttggattaaatcatcattttctcgtatcattaatgaaggataattttataaaatcatttatacttgctttttc 5440578  T
Q  130 acatataaaattaactatatttttaattcgtatggaatagttga----ctatgatttaagatggaggaaataacaatcagtaatgagtagattttttatt 225  Q
    |||||||||||||||||||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5440579 acatataaaattaactatatttttaattcgtatggaatagttaaagatctatgatttaagatggaggaaataacaatcagtaatgagtagattttttatt 5440678  T
Q  226 tggtacaatagagggatatctacaacaaaattttattgactca 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5440679 tggtacaatagagggatatctacaacaaaattttattgactca 5440721  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 38223713 - 38223668
Alignment:
Q  73 ttttctcatattattaatgaaggataattttataaaatcatttata 118  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||    
T  38223713 ttttctcatatcattaatgaaggataattttgtaaaataatttata 38223668  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 110
Target Start/End: Original strand, 5461680 - 5461709
Alignment:
Q  81 tattattaatgaaggataattttataaaat 110  Q
    ||||||||||||||||||||||||||||||    
T  5461680 tattattaatgaaggataattttataaaat 5461709  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 21652890 - 21652849
Alignment:
Q  73 ttttctcatattattaatgaaggataattttataaaatcatt 114  Q
    |||||||||||||||||| |||||||||||| ||||||||||    
T  21652890 ttttctcatattattaataaaggataattttgtaaaatcatt 21652849  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 24346321 - 24346359
Alignment:
Q  80 atattattaatgaaggataattttataaaatcatttata 118  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  24346321 atatcatttatgaaggataattttataaaatcatttata 24346359  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 27003238 - 27003286
Alignment:
Q  73 ttttctcatattattaatgaaggataattttataaaatcatttatactt 121  Q
    ||||||| ||| ||||||||| |||||||||||||||| ||||||||||    
T  27003238 ttttctcgtataattaatgaacgataattttataaaattatttatactt 27003286  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 2734667 - 2734613
Alignment:
Q  99 attttataaaatcatttatacttgctttttcacatataaaattaactatattttt 153  Q
    |||||||||||||||||||| ||  | |||| |||| ||||||||||||||||||    
T  2734667 attttataaaatcatttataatttttctttcccatacaaaattaactatattttt 2734613  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 34708148 - 34708193
Alignment:
Q  73 ttttctcatattattaatgaaggataattttataaaatcatttata 118  Q
    ||||||| ||| |||||||||  |||||||||||||||||||||||    
T  34708148 ttttctcgtataattaatgaacaataattttataaaatcatttata 34708193  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 2028132 - 2028067
Alignment:
Q  75 ttctcatattattaatgaaggataattttataaaatcatttatacttgctttttcacatataaaat 140  Q
    ||||||||||||||||||| || |||||| ||||||||   ||| || || |||||||||||||||    
T  2028132 ttctcatattattaatgaaagacaattttgtaaaatcacacataatttctctttcacatataaaat 2028067  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 3875791 - 3875827
Alignment:
Q  74 tttctcatattattaatgaaggataattttataaaat 110  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  3875791 tttctcatatcattaatgaaggataattttgtaaaat 3875827  T

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