View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_67 (Length: 266)
Name: NF0844_low_67
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 19476855 - 19477105
Alignment:
| Q |
1 |
atggtcaaatgatcaaggtttggatacattgttttatggtgaatatgaaaattatggacctggttcaaagattgataatcgtgttgaatgggttggttat |
100 |
Q |
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| T |
19476855 |
atggtcaaatgatcaaggtttggatacattgttttatggtgaatatgaaaattatggacctggttcaaagattgataatcgtgttgaatgggttggttat |
19476954 |
T |
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| Q |
101 |
catttgatggattataatgatgcttataatttcagtgtttctgagtttattattggtgatcaatggcttgagtctacttcagttccttatgatgatggaa |
200 |
Q |
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| T |
19476955 |
catttgatggattataatgatgcatataatttcagtgtttctgagtttattattggtgatcaatggcttgagtctacttcagttccttatgatgatggaa |
19477054 |
T |
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| Q |
201 |
tttgacatagaaaagataatgtaactttggtttgttacatttttcattaat |
251 |
Q |
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| T |
19477055 |
tttgacatagaaaagataatgtaactttggttttttacatttttcattaat |
19477105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 1623280 - 1623236
Alignment:
| Q |
23 |
gatacattgttttatggtgaatatgaaaattatggacctggttca |
67 |
Q |
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| T |
1623280 |
gatacattgtattatggagagtatgaaaactatggacctggttca |
1623236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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