View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0844_low_70 (Length: 252)
Name: NF0844_low_70
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_70 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 21745014 - 21744851
Alignment:
| Q |
71 |
gttatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtggg |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21745014 |
gttatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtggg |
21744915 |
T |
|
| Q |
171 |
atgttaagcttttagttttcttttgtagaatttgtggtctctaagcatgggacagaaataagga |
234 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
21744914 |
atgttaagcttttaatttgcttttgtagaaattgtggtctctaagcatgaggaagaaataagga |
21744851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 42740868 - 42740705
Alignment:
| Q |
71 |
gttatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtggg |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
42740868 |
gttatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttatgctggataccgagtggaatgagtgtg |
42740769 |
T |
|
| Q |
171 |
atgttaagcttttagttttcttttgtagaatttgtggtctctaagcatgggacagaaataagga |
234 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
42740768 |
atgttaagcttttagtttgcttttgtagaaattgtggtctctaagcatgaggaagaaataagga |
42740705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 177
Target Start/End: Original strand, 180921 - 181025
Alignment:
| Q |
73 |
tatatactgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtgggat |
172 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| |
|
|
| T |
180921 |
tatatactgcttctggagttttttctgttctactgagccagtttaaagtacttgaaaatgaacttgctttgcgctggataccgagtggaacgagtgtgat |
181020 |
T |
|
| Q |
173 |
gttaa |
177 |
Q |
| |
|
||||| |
|
|
| T |
181021 |
gttaa |
181025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 6960370 - 6960271
Alignment:
| Q |
78 |
actgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtgggatgttaa |
177 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
6960370 |
actgcttctggtgttttttctgtccgactaagccagtttaaagtacttgaaaatgaacttgctttgcgctggataccgagtggaatgagtgtgatgttaa |
6960271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 6967800 - 6967701
Alignment:
| Q |
78 |
actgcttctggtgttttttctgtcctactgaaccagtttaaagtacttgaaaatgaacttgctttgtgctggataccgagtggaatgagtgggatgttaa |
177 |
Q |
| |
|
|||| |||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| || |||||||| |
|
|
| T |
6967800 |
actgtttctggtgttttttctatttgactgagccatcttaaagtacttgaaaatgaacttgctttttgctggatactgagtggaatgaatgtgatgttaa |
6967701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3162 times since January 2019
Visitors: 6171