View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_74 (Length: 251)
Name: NF0844_low_74
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_74 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43436583 - 43436804
Alignment:
| Q |
1 |
cagtgcaagtctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatggcaaagcaaatctcgcacataact |
100 |
Q |
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| T |
43436583 |
cagtgcaagtctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatggcaaagcaaatctcgcacataact |
43436682 |
T |
|
| Q |
101 |
gatatcaaccataatggatatgcactgcgcactggattggttattcgataatgcnnnnnnnngcaaaggataaccagtcgcataacaatgacaaagcgat |
200 |
Q |
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| T |
43436683 |
gatatcaaccataatggatatgcactgcgcactggattggttattcgataatgcaagaaaaagcaaaggataaccagtcgcataacaatgacaaagcgat |
43436782 |
T |
|
| Q |
201 |
atggatttatcttagaggatcg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
43436783 |
atggatttatcttagaggatcg |
43436804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13826580 - 13826795
Alignment:
| Q |
1 |
cagtgcaagtctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatggcaaagcaaatctcgcacataact |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
13826580 |
cagtgcaagtctgtcgagatatgtttcgcggttgacaggaagccacttagggaattgatccaatatccaggatatggcaaaccaaatctcgcatataact |
13826679 |
T |
|
| Q |
101 |
gatatcaaccataatggatatgcactgcgcactggattggttattcgataatgcnnnnnnnngcaaaggataaccagtcgcataacaatgacaaagcgat |
200 |
Q |
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|||| ||||||||||| ||||||| |||| || ||||| |||| |||||||||| |||||||| ||||||||||| ||||||||| || |||| |
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| T |
13826680 |
gataccaaccataatgcatatgcattgcggaccggatttgttaatcgataatgcaagaaaatgcaaaggacaaccagtcgcagaacaatgaccaatcgat |
13826779 |
T |
|
| Q |
201 |
atggatttatcttaga |
216 |
Q |
| |
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| ||||||||| |||| |
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|
| T |
13826780 |
aaggatttatcctaga |
13826795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 43947835 - 43947778
Alignment:
| Q |
163 |
gcaaaggataaccagtcgcataacaatgacaaagcgatatggatttatcttagaggat |
220 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| | |||||||||| ||||| |||||||| |
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| T |
43947835 |
gcaaaggataaccaattgcagaacaatgaccatgcgatatggaattatcctagaggat |
43947778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 9477312 - 9477212
Alignment:
| Q |
11 |
ctgtcgagatatgtttcacggttgataggaagccacttagggaattgatccaatatccaggatatggcaaagcaaatctcgcacataactgatatcaacc |
110 |
Q |
| |
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||||| ||||||||||||||||| | |||||||||||| ||||| |||||||| ||||| || | |||||| |||| || || ||||||||||| |||| |
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| T |
9477312 |
ctgtccagatatgtttcacggttcacaggaagccacttggggaactgatccaagatccaagaaaaggcaaaccaaacttcacatataactgatattaacc |
9477213 |
T |
|
| Q |
111 |
a |
111 |
Q |
| |
|
| |
|
|
| T |
9477212 |
a |
9477212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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