View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0844_low_75 (Length: 251)
Name: NF0844_low_75
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_75 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 3644515 - 3644391
Alignment:
| Q |
117 |
gaacctggaaccccatctagctaaaaagtgaccaaagtataaataagtgatcaaagaagaaggaaaatcttgttcttgagatagcaaagtttccctcaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3644515 |
gaacctggaaccccatctagctaaaaagtgaccaaagtataaataagtgatcaaagaagaaggaaaatcttgttcttgagatagcaaagtttccctcaaa |
3644416 |
T |
|
| Q |
217 |
atttctctttcatccatatcctatg |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3644415 |
atttctctttcatccatatcctatg |
3644391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 3634643 - 3634593
Alignment:
| Q |
117 |
gaacctggaaccccatctagctaaaaagtgaccaaagtataaataagtgat |
167 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| ||||||||||||||| |
|
|
| T |
3634643 |
gaacctggaaccccatctagataaaaagtggccaatgtataaataagtgat |
3634593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 3644613 - 3644582
Alignment:
| Q |
19 |
caacaaaaggatcaagttcaattcaatagtgc |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3644613 |
caacaaaaggatcaagttcaattcaatagtgc |
3644582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3790 times since January 2019
Visitors: 6175