View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_78 (Length: 248)
Name: NF0844_low_78
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43436424 - 43436188
Alignment:
| Q |
1 |
aaaggagcctccgcttgtgactgccaatactgtactttcaattcttgcagttgattatccagtggataaggtttcctgctacgtatcagatgacggcgct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43436424 |
aaaggagcctccgcttgtgactgccaatactgtactttcaattcttgcagttgattatccagtggataaggtttcctgctacgtatcggatgacggcgct |
43436325 |
T |
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| Q |
101 |
gctatgttgacattggaagctcttgctcagacatcagagtttgcgagaaaatgggttcctttctgcaagaagtatactattgaaccccgtgcacccgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436324 |
gctatgttgacattggaagctcttgctcagacatcagagtttgcgagaaaatgggttcctttctgcaagaagtatactattgaaccccgtgcacccgagt |
43436225 |
T |
|
| Q |
201 |
cgttctttgcgcagaagattggcttcttcaaggatat |
237 |
Q |
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| T |
43436224 |
cgttctttgcgcagaagattgacttcttcaaggatat |
43436188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13826422 - 13826202
Alignment:
| Q |
1 |
aaaggagcctccgcttgtgactgccaatactgtactttcaattcttgcagttgattatccagtggataaggtttcctgctacgtatcagatgacggcgct |
100 |
Q |
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|||||||||||| || ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| || || ||||||||||| |
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| T |
13826422 |
aaaggagcctccactcgtgactgccaatactgtactttctattctttcagttgactatccagtggataaggtttcctgctatgtttctgatgacggcgcc |
13826323 |
T |
|
| Q |
101 |
gctatgttgacattggaagctcttgctcagacatcagagtttgcgagaaaatgggttcctttctgcaagaagtatactattgaaccccgtgcacccgagt |
200 |
Q |
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| T |
13826322 |
gctatgttgacatttgaagctcttgctgaaacatcagagtttgcaagaaaatgggttccattcaccaagaagtataatattgaaccccgcgcacccgagt |
13826223 |
T |
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| Q |
201 |
cgttctttgcgcagaagattg |
221 |
Q |
| |
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|| |||||| |||||||||| |
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| T |
13826222 |
ggtactttgcacagaagattg |
13826202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 9477762 - 9477961
Alignment:
| Q |
1 |
aaaggagcctccgcttgtgactgccaatactgtactttcaattcttgcagttgattatccagtggataaggtttcctgctacgtatcagatgacggcgct |
100 |
Q |
| |
|
||||||||| || ||||||| |||||||||||||| || |||||||| ||||| || |||||||||||||| || || || || || ||||| || ||| |
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| T |
9477762 |
aaaggagcccccaattgtgacagccaatactgtactatccattcttgctgttgactacccagtggataaggtctcatgttatgtctctgatgatggtgct |
9477861 |
T |
|
| Q |
101 |
gctatgttgacattggaagctcttgctcagacatcagagtttgcgagaaaatgggttcctttctgcaagaagtatactattgaaccccgtgcacccgagt |
200 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| ||||| || ||||||||||||||||||||||| ||| |||||||| || ||||| |||| |
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| T |
9477862 |
gctatgttgacatttgaagctcttgccgagacatcagaatttgcaaggaaatgggttcctttctgcaagaaatatgaaattgaaccacgagcacctgagt |
9477961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 44377666 - 44377540
Alignment:
| Q |
47 |
gcagttgattatccagtggataaggtttcctgctacgtatcagatgacggcgctgctatgttgacattggaagctcttgctcagacatcagagtttgcga |
146 |
Q |
| |
|
||||| |||||||| ||||| || || | ||||| || ||||| ||||| || |||||| | ||||| ||||| ||| | | || ||||||||||| | |
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| T |
44377666 |
gcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaa |
44377567 |
T |
|
| Q |
147 |
gaaaatgggttcctttctgcaagaagt |
173 |
Q |
| |
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||||||||||||| ||||||||||||| |
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| T |
44377566 |
gaaaatgggttccattctgcaagaagt |
44377540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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