View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_8 (Length: 527)
Name: NF0844_low_8
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 30 - 397
Target Start/End: Original strand, 41702926 - 41703317
Alignment:
| Q |
30 |
gatattgaattgggtgtgttaagaaaaatgattggtgaatcacagattaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatg |
129 |
Q |
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| T |
41702926 |
gatattgaattgggtgtgttaagaaaaatgattggtgaattacagagtaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatg |
41703025 |
T |
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| Q |
130 |
agttgaggaatgaaagcaggaaattgacagaggagaagtgcgaagtggagatattacttaaggctttgaagaggaagaggaagtttattcgagtgcgtga |
229 |
Q |
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| T |
41703026 |
agttgaggaatgaaagcaggaaattgacagaggagaagtgcgaagtggagatattacttaaggctttgaagaggaacaggaagtttattcgagtgggtga |
41703125 |
T |
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| Q |
230 |
aagagcagcaacattggaggaagatatcatacttttgacaagcttagaagaggaagttcctatg---------------------gttggtgacaacgag |
308 |
Q |
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| T |
41703126 |
aagagcagcaacatcggaggaagatatcatacttttgacaagcttagaagaggaagttcctatggttgatcattttgaagagaatgttggtgacaacgag |
41703225 |
T |
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| Q |
309 |
ttcagaaatgaagatgcctatcacactcttggagtttctggtagtaggagatgcct---atcatcaggtatatggaaattatgcatgtattt |
397 |
Q |
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| T |
41703226 |
ttcagaaatgaagatgcctatcacactcttggagttgctggtagtaggagatgcctatcatcatcaggtatatggaaattatgcatgtattt |
41703317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 73 - 266
Target Start/End: Complemental strand, 41469579 - 41469392
Alignment:
| Q |
73 |
agattaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgcga |
172 |
Q |
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| T |
41469579 |
agattaaaaatgatgaattgaaggaaacagcaaagaagaatttggtaatgatgagtgacttgaggcatgaaagcaggaaattggcagaggagaagcgcga |
41469480 |
T |
|
| Q |
173 |
agtggagatattacttaaggctttgaagaggaagaggaagtttattcgagtgcgtgaaagagcagcaacattggaggaagatatcatacttttg |
266 |
Q |
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|| |||| ||||||| ||||||||||||| ||||||||||||| |||||||||||| | |||| |||||||||||| |||| |||||| |
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| T |
41469479 |
agccgagacattacttgaggctttgaagag------gaagtttattcgactgcgtgaaagagtaacaacgttggaggaagatctcattcttttg |
41469392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 41499239 - 41499197
Alignment:
| Q |
306 |
gagttcagaaatgaagatgcctatcacactcttggagtttctg |
348 |
Q |
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| T |
41499239 |
gagttcagaaatgtagatgctcatcacactcttggagtttctg |
41499197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 41547604 - 41547556
Alignment:
| Q |
73 |
agattaaaattggagaattggaggaaacagtaaagaagaatttggcaac |
121 |
Q |
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| T |
41547604 |
agattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaac |
41547556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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