View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_82 (Length: 218)
Name: NF0844_low_82
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 23627818 - 23627952
Alignment:
| Q |
1 |
ttttgtgatattttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattga |
100 |
Q |
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| T |
23627818 |
ttttgtgatattttcaaagccctgaggagcctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattga |
23627917 |
T |
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| Q |
101 |
gaattgtttgagtacatgtcacaatctacattcag |
135 |
Q |
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| T |
23627918 |
gaattgtttgagtacatgtcacaatctacattcag |
23627952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 23640428 - 23640562
Alignment:
| Q |
1 |
ttttgtgatattttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattga |
100 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23640428 |
ttttgtgatattttcaaagccctgaggagtctgcacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattga |
23640527 |
T |
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| Q |
101 |
gaattgtttgagtacatgtcacaatctacattcag |
135 |
Q |
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| T |
23640528 |
gaattgtttgagtacatgtcacaatctacattcag |
23640562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 23654354 - 23654476
Alignment:
| Q |
10 |
attttcaaagccctgaggagcctggacaaaggcaatttcatgtcccttctcttcatccatgaagaagcaaagtgcatctcttattgattgagaattgttt |
109 |
Q |
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|||||||||| |||| |||| ||| ||||| ||||||||||| || ||||||||||||||||| | || || | ||||||||| |||| ||||||||| |
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| T |
23654354 |
attttcaaaggcctgtggagactgcacaaaagcaatttcatggcctttctcttcatccatgaaataacagagagaatctcttatagattctgaattgttt |
23654453 |
T |
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| Q |
110 |
gagtacatgtcacaatctacatt |
132 |
Q |
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| T |
23654454 |
gagtacatgtcacaatctacatt |
23654476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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