View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_low_86 (Length: 206)
Name: NF0844_low_86
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_low_86 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 55; Significance: 8e-23; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 21151139 - 21151077
Alignment:
| Q |
16 |
attagttttcgattcactaaaccaaacacaaatataggaactaaagaataaatacaaacatgc |
78 |
Q |
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| T |
21151139 |
attagttttcggttcactaaaccaaacacaaatataggaactaaagaataagtacaaacatgc |
21151077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 21182251 - 21182192
Alignment:
| Q |
10 |
ttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaataaata |
69 |
Q |
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| T |
21182251 |
ttgtggattaattttcgattcacaaaaccaaacacaaacataggaactaaagaataaata |
21182192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 21315112 - 21315048
Alignment:
| Q |
7 |
atcttgtggattagtttt-cgattcactaaa-ccaaacacaaatataggaactaaagaataaata |
69 |
Q |
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| T |
21315112 |
atcttgtggattaatttttctattcactaaaaccaaacacaaatattggaactaaagaataaata |
21315048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 21267546 - 21267478
Alignment:
| Q |
7 |
atcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaataaatacaaaca |
75 |
Q |
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| T |
21267546 |
atcttttggatcaattttcgatttagtaaaccaaacacaaatataggaaccatagaattattacaaaca |
21267478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 21303687 - 21303655
Alignment:
| Q |
46 |
aatataggaactaaagaataaatacaaacatgc |
78 |
Q |
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| T |
21303687 |
aataaaggaactaaagaataaatacaaacatgc |
21303655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 11843866 - 11843796
Alignment:
| Q |
7 |
atcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaataaatacaaacatgc |
78 |
Q |
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| T |
11843866 |
atcttgtgcattaatttttgattcactaaaccaaacacaa-tataggaactaaagaataaatacaaacatgc |
11843796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 71985 - 72055
Alignment:
| Q |
7 |
atcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaataaatacaaacatg |
77 |
Q |
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||||||| ||||| |||||||||||| ||||||| ||||||| ||||||||||||||| |||| ||||||| |
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| T |
71985 |
atcttgttgattaattttcgattcaccaaaccaaccacaaatctaggaactaaagaatgaatagaaacatg |
72055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 11415 - 11345
Alignment:
| Q |
7 |
atcttgtggattagttttcgattcactaaaccaaacacaaatataggaactaaagaataaatacaaacatg |
77 |
Q |
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||||||| ||||| |||||||||||| ||||||| ||||||| |||||||||||| || |||| ||||||| |
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| T |
11415 |
atcttgttgattaattttcgattcaccaaaccaaccacaaatctaggaactaaagtatgaatagaaacatg |
11345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 18307 - 18265
Alignment:
| Q |
7 |
atcttgtggattagttttcgattcactaaaccaaacacaaata |
49 |
Q |
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|||||||||||| ||||||||||| |||||||||| ||||||| |
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| T |
18307 |
atcttgtggatttgttttcgattcgctaaaccaaatacaaata |
18265 |
T |
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