View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_high_3 (Length: 475)
Name: NF0845_high_3
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 30 - 466
Target Start/End: Original strand, 48310222 - 48310658
Alignment:
| Q |
30 |
gttaaaccagaattatattataaatataatttaatgaattcaaatagaaatagacgacatacttgagtttcaagaagttttttgacactagaagcacatc |
129 |
Q |
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| T |
48310222 |
gttaaaccagaattatattataaatataatttaatgaattcaaatagaaatagacgacatacttgagtttcaagaagttttttgacactagaagcacatc |
48310321 |
T |
|
| Q |
130 |
cctcacacatcattccctgaacatgaagaacaacatcagcatcattgttatggaggtggtccccactggaagtagttgaggttgaacaacaccgcaatgg |
229 |
Q |
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| T |
48310322 |
cctcacacatcattccctgaacatgaagaacaacatcagcatcattgttatggaggtggtccccactggaagtagttgaggctgaacaacaccgtaatgg |
48310421 |
T |
|
| Q |
230 |
caaaacgcgatgatgatggttcagtttcaccagctgttgttggatgcctctgtctctgccaaaattgagattcagaggtttcaaaaacatcttttgcatc |
329 |
Q |
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|||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
48310422 |
caaaacgcgatgatgatggttcagcttcagcagctgctgttggatgcctctgtctctgccaaaatttagattcagaggtttcaaaaacatcttttgcgtc |
48310521 |
T |
|
| Q |
330 |
acaacagaatgagaatccattcttgttggaatttgaagtacaagaatcgaagaacaagaagatgatgatgacatcattcaagaccaatcttattcctgtc |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48310522 |
acaacagaatgagaatccattcttgttggaatttgaagtgcaagaatcgaagaacaagaagatgatgatgacatcattcaagaccaatcttgttcctgtc |
48310621 |
T |
|
| Q |
430 |
caattattattttagctctttttcttaacagaataat |
466 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
48310622 |
caattattattttagctctttttcttaacaaaataat |
48310658 |
T |
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