View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_high_4 (Length: 443)
Name: NF0845_high_4
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 44 - 434
Target Start/End: Original strand, 161360 - 161752
Alignment:
| Q |
44 |
ctttgtaaacatgttgtggtgaattcaacttgttactatgagattattaatgagcttaataagcattaccagaatatttggaaccgtaccatggctgcat |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
161360 |
ctttgtaaacatgttgtggtgaattcaacttgttactatgagattattaatgagcttaataagcattatcagaatatttggaaccgtaccatggctgcat |
161459 |
T |
|
| Q |
144 |
tatggttggtgtattttagagatgcttggagagctagttctactttggttgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaa |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
161460 |
tatggttggtgtattttagagatgcttggagagctagttctactttggttgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaa |
161559 |
T |
|
| Q |
244 |
gattctcttctagtagagaaacttgaaaatgtataattcgtggtttggattattatcataactagattga--tgagtgttatgtgtatttatttattttg |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
161560 |
gattctcttctagtagagaaacttgaaaatgtataattcgtggtttggattattatcataactagattgatgtgtgtgttatgtgtatttatttattttg |
161659 |
T |
|
| Q |
342 |
gtctaagtatagttgttaagattcacccttaaagtgaataagtgggtaatttagagttcgaaatcccactggtatatactatagtgtctctgc |
434 |
Q |
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| T |
161660 |
gtctaagtatagttgttaagattcacccttaaagtgaataagtgggtaatttagagttcgaaatcccactggtatatactatagtgtctctgc |
161752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 44 - 320
Target Start/End: Original strand, 152883 - 153159
Alignment:
| Q |
44 |
ctttgtaaacatgttgtggtgaattcaacttgttactatgagattattaatgagcttaataagcattaccagaatatttggaaccgtaccatggctgcat |
143 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||| ||||| |||||||||||||||||||||||| || ||| |
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| T |
152883 |
ctttgcaaacatgttgttgtgaattcaacttgttactatgatactattaataagcttaataaccattatcagaatatttggaaccgtaccatgactacat |
152982 |
T |
|
| Q |
144 |
tatggttggtgtattttagagatgcttggagagctagttctactttggttgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaa |
243 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
152983 |
tatggttggtgtattttagagatgcttggagagctagttctactttggttgggattgcttttcttgtttacactgcattcaactttgtacgtcttgccaa |
153082 |
T |
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| Q |
244 |
gattctcttctagtagagaaacttgaaaatgtataattcgtggtttggattattatcataactagattgatgagtgt |
320 |
Q |
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|||||| ||||| |||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| |||| |
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| T |
153083 |
gattcttttctactagacaaacttgaaaatgtataattcatggtttgaattattatcataactagatttatgtgtgt |
153159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 13660373 - 13660334
Alignment:
| Q |
7 |
cctgggtaccccaccatcctccatgcaacagctagggctt |
46 |
Q |
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||||||| |||||||||||||||||||||||||| ||||| |
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| T |
13660373 |
cctgggtgccccaccatcctccatgcaacagctaaggctt |
13660334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 33687504 - 33687468
Alignment:
| Q |
367 |
cccttaaagtgaataagtgggtaatttagagttcgaa |
403 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||| |
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| T |
33687504 |
cccttaaggtgaataagtggggaatttagagttcgaa |
33687468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 33704510 - 33704474
Alignment:
| Q |
367 |
cccttaaagtgaataagtgggtaatttagagttcgaa |
403 |
Q |
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||||||| ||||||||||||| ||||||||||||||| |
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| T |
33704510 |
cccttaaggtgaataagtggggaatttagagttcgaa |
33704474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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