View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_high_7 (Length: 365)
Name: NF0845_high_7
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 30 - 295
Target Start/End: Complemental strand, 44666557 - 44666292
Alignment:
| Q |
30 |
gttacacactttcatttttacttacctgttactatgtttttccagcttgcaaacaagaaagtcccacatgggaagtgttaagaaggatagcgaaaaaata |
129 |
Q |
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| T |
44666557 |
gttacatactttcatttttacttacctgttactatgtttttccagcttgcaaacaagaaagtcccacataggaagtgttaagaaggatagcgaaaaaata |
44666458 |
T |
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| Q |
130 |
tctataaaagttgaagcatgaaccaataccggaattgaattatagtattattaattcattactttcataattaattaattgttttgatcccaatttaagt |
229 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44666457 |
tctataaaagttgaagcatgaaccaataccagaattgaattatagtattattaattcattactttcataattaattaattgttttgatcccaatttaagt |
44666358 |
T |
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| Q |
230 |
ggtttttagagtaattaagaggtttttgagctatagttgttctcatttaaaaccttagttcatgac |
295 |
Q |
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| T |
44666357 |
ggtttttagagtaattaagaggtttttgagctatagttgttctcatttaaaaccttagttcatgac |
44666292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 44667126 - 44667221
Alignment:
| Q |
30 |
gttacacactttcatttttacttacctgttactatgtttttccagcttgcaaacaagaaagtcccacatgggaagtgttaagaaggatagcgaaaa |
125 |
Q |
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| T |
44667126 |
gttacatactttcatttttacttacctgttactatgtttttccagcttgcaaacaagaaagtcccacataggaagtgttaagaaggatagcgaaaa |
44667221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 13059075 - 13058991
Alignment:
| Q |
56 |
tgttactatgtttttccagcttgcaaacaagaaagtcccacatgggaagtgttaagaaggatagcgaaaaa-atatctataaaag |
139 |
Q |
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| T |
13059075 |
tgttaatatgtgttttaagcttgcaaacaagcaagtcctacatcggaagtgttgagacgaatagcgaaaaagatatctataaaag |
13058991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 354
Target Start/End: Complemental strand, 44666265 - 44666232
Alignment:
| Q |
321 |
attgatagttaaatttaaagtttaagtaattcat |
354 |
Q |
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| T |
44666265 |
attgatagttaaatttaaagtttaagtaattcat |
44666232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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