View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_1 (Length: 1041)
Name: NF0845_low_1
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 572 - 944
Target Start/End: Complemental strand, 42891090 - 42890718
Alignment:
| Q |
572 |
gacacacatccattaattaaattgaataaataagacaatgcaattacataacatacaaatttcaagatagagtaagataaaatgctacgataaattaact |
671 |
Q |
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| T |
42891090 |
gacacacatccattaattaaattgaataaataagacaatgcaattacatcacatacaaatttcaagatagagtaagataaaatactacgataaaataact |
42890991 |
T |
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| Q |
672 |
tggagaaaatgaaatggaaaattgattatttaaaacaacggtaattccaagctcaagcaacaagaattcaatatttaaattaaaaacataatttttaagc |
771 |
Q |
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| T |
42890990 |
tggagaaaatgaaatggaaaattgattatttaaaacaacggtaattccaagctcaagcaacaagaattcaatatttaaattaaaaacataatttttaagc |
42890891 |
T |
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| Q |
772 |
aaacttagaggactttgacatcattaattcttctatatttagtcatcatagaggtcattgatgcctggcttggttggtccagggatcagacggttttgct |
871 |
Q |
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| T |
42890890 |
aaacttaaaggactttgacatcattaattcttctatatttagtcatcatagaggtcattgatgcctggtttggttggtccagggatcaaacgattttgct |
42890791 |
T |
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| Q |
872 |
taatttgagcaattttctcatgatcttcttttgttaatgaccaatcaaagatacacaaattttggttcattct |
944 |
Q |
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| T |
42890790 |
taatttgatcaatcttctcatgatcctcctttgtcaatgaccaatcaaagatacacaaattttggttcattct |
42890718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 808 - 944
Target Start/End: Original strand, 42874447 - 42874583
Alignment:
| Q |
808 |
atttagtcatcatagaggtcattgatgcctggcttggttggtccagggatcagacggttttgcttaatttgagcaattttctcatgatcttcttttgtta |
907 |
Q |
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| T |
42874447 |
atttagtcatcatagaggtcattgaggcctggtttggttggtccagggatcaaacgattttgcttaatttgatcaatcttctcatgatcctcctttgtca |
42874546 |
T |
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| Q |
908 |
atgaccaatcaaagatacacaaattttggttcattct |
944 |
Q |
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| T |
42874547 |
atgaccaatcaaagatacacaaattttggttcattct |
42874583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 809 - 944
Target Start/End: Original strand, 42883579 - 42883714
Alignment:
| Q |
809 |
tttagtcatcatagaggtcattgatgcctggcttggttggtccagggatcagacggttttgcttaatttgagcaattttctcatgatcttcttttgttaa |
908 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||| ||||||||||| || ||||| || |
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| T |
42883579 |
tttaatcatcatagaggtcattgatgcctggtttggttggtccagggatcaaacgattttgcttaatttgatcaatcttctcatgatcctcctttgtcaa |
42883678 |
T |
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| Q |
909 |
tgaccaatcaaagatacacaaattttggttcattct |
944 |
Q |
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| T |
42883679 |
tgaccaatcaaagatacacaaattttggttcattct |
42883714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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