View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_10 (Length: 445)
Name: NF0845_low_10
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 188 - 432
Target Start/End: Original strand, 49372006 - 49372246
Alignment:
| Q |
188 |
cactcaaaataatttgatgttgtaatacttaacatacatttttatctttttctagcaaaccaaccaatttccagaagacaaaaccaattcttatctgtac |
287 |
Q |
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| T |
49372006 |
cactcaaaataagtt--tgatgtaaaacttaacatacatttttatctttttctagcaaaccaaccaatttccagaagacaaaaccaattcttatctgtac |
49372103 |
T |
|
| Q |
288 |
atgaaaaagaataatctgtacagtaatactaacatgacaatgacaatgagccacagtatttgtggcagaataaaatcccttaacagagtgctgcatttac |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49372104 |
atgaaaaagaataatctgtacagtaatactaacatgacaatgacaatgagccacagtatttgtggcagaataaaatcccttaac--agtgctgcatttac |
49372201 |
T |
|
| Q |
388 |
aagagaataaaatcatcaacctggagactctgtccatgcgtgtct |
432 |
Q |
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| T |
49372202 |
aagagaataaaatcatcaacctggagactctgtccatgcgtgtct |
49372246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 30 - 154
Target Start/End: Original strand, 49371848 - 49371972
Alignment:
| Q |
30 |
tctctctctctaaataatcaccgattttatcaattctcattggacatcaatgtaaaaccaatttacaccgagaatgcatgacatcttttctcttcttttc |
129 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49371848 |
tctctctctctaaataatcgccgattttatcaattctcattggacgtcaatgtaaaaccaatttacaccgacaatgcatgacatcttttctcttcttttc |
49371947 |
T |
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| Q |
130 |
aaccgacgatgcatacaagttaaac |
154 |
Q |
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|||||| |||||||||||||||||| |
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| T |
49371948 |
aaccgatgatgcatacaagttaaac |
49371972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 52090257 - 52090212
Alignment:
| Q |
274 |
attcttatctgtacatgaaaaagaataatctgtacagtaatactaa |
319 |
Q |
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| T |
52090257 |
attcttatctgtgaatgaaaaagaataaactgtacagtaatactaa |
52090212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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