View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0845_low_12 (Length: 443)

Name: NF0845_low_12
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0845_low_12
NF0845_low_12
[»] chr1 (2 HSPs)
chr1 (85-443)||(25178120-25178480)
chr1 (349-384)||(31874545-31874580)
[»] chr7 (3 HSPs)
chr7 (317-385)||(17052851-17052920)
chr7 (335-376)||(33589170-33589211)
chr7 (317-376)||(19048062-19048119)
[»] chr3 (3 HSPs)
chr3 (343-376)||(28958248-28958281)
chr3 (317-385)||(31778096-31778165)
chr3 (317-385)||(44887346-44887415)
[»] chr5 (1 HSPs)
chr5 (317-372)||(9387535-9387592)
[»] chr4 (1 HSPs)
chr4 (335-376)||(2601837-2601878)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 85 - 443
Target Start/End: Original strand, 25178120 - 25178480
Alignment:
Q  85 aatagtttgataacttgggaattattctataaatttttataaacggagggattagattgattcaaatacccaaattggggaccactgcaatgaggtggtg 184  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25178120 aatagtttgataacttgggaattattctataattttttataaacggagggattagattgattcaaatacccaaattggggaccactgcaatgaggtggtg 25178219  T
Q  185 tggctgtatgtgatatcgacttccagaattgtggtgtgtttgaactttgaactttcga----agtgagtacttgggttgaggatctcttaataggactgc 280  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  25178220 tggctgtatgtgatatcgacttccaaaattgtggtgtgtttaaactttgaactttcgaagtgagtgagtacttgggttgaggatctcttaataggactgc 25178319  T
Q  281 gaataagtcaagttaataaactatt------attannnnnnnaacaatcaaaaatagaatatatatttgaaacacaagagaattctcaagcacaaggtgt 374  Q
    |||||||||||||||||||||||||       |||       |||||||||||||| ||||||||||||||||||||||||||||||||    |||        
T  25178320 gaataagtcaagttaataaactatttatttatttatttttttaacaatcaaaaataaaatatatatttgaaacacaagagaattctcaa----aag---- 25178411  T
Q  375 gcaaaa--gaaaattctacatggttacaaaggctaatatagtctgagttatatatagttctactatttttt 443  Q
      ||||   ||||   ||||||||||||||||| |||||| |||||||||||||||||| |||||||||||    
T  25178412 --aaaactcaaaaaagtacatggttacaaaggccaatataatctgagttatatatagttttactatttttt 25178480  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 384
Target Start/End: Complemental strand, 31874580 - 31874545
Alignment:
Q  349 caagagaattctcaagcacaaggtgtgcaaaagaaa 384  Q
    |||||||||||||||||||||||||||| |||||||    
T  31874580 caagagaattctcaagcacaaggtgtgctaaagaaa 31874545  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 17052851 - 17052920
Alignment:
Q  317 aacaatcaaaaatagaatatatatttgaaac-acaagagaattctcaagcacaaggtgtgcaaaagaaaa 385  Q
    ||||| ||||||| ||||||||||| ||||| | ||||||| ||||||||||||||||||| | ||||||    
T  17052851 aacaagcaaaaatggaatatatattagaaaccaaaagagaaatctcaagcacaaggtgtgctagagaaaa 17052920  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 33589211 - 33589170
Alignment:
Q  335 atatatttgaaacacaagagaattctcaagcacaaggtgtgc 376  Q
    ||||||| ||||||||||||| ||||||||||||||||||||    
T  33589211 atatattagaaacacaagagatttctcaagcacaaggtgtgc 33589170  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 19048062 - 19048119
Alignment:
Q  317 aacaatcaaaaatagaatatatatttgaaacacaagagaattctcaagcacaaggtgtgc 376  Q
    |||||| ||||||||||||||   | | ||| ||||||||||||||||||||||||||||    
T  19048062 aacaataaaaaatagaatataa--tagcaacgcaagagaattctcaagcacaaggtgtgc 19048119  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 28958281 - 28958248
Alignment:
Q  343 gaaacacaagagaattctcaagcacaaggtgtgc 376  Q
    ||||||||||||||||||||||||||||||||||    
T  28958281 gaaacacaagagaattctcaagcacaaggtgtgc 28958248  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 31778096 - 31778165
Alignment:
Q  317 aacaatcaaaaatagaatatatatttgaaa-cacaagagaattctcaagcacaaggtgtgcaaaagaaaa 385  Q
    ||||| ||||||| ||||||||||| |||| || ||||||| ||||||||||||||||||| | ||||||    
T  31778096 aacaagcaaaaatggaatatatattagaaatcaaaagagaaatctcaagcacaaggtgtgctagagaaaa 31778165  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 44887346 - 44887415
Alignment:
Q  317 aacaatcaaaaatagaatatatatttgaaacacaa-gagaattctcaagcacaaggtgtgcaaaagaaaa 385  Q
    ||||| |||||||  |||||||||| |||||| || ||||| ||||||||||||||||||| | ||||||    
T  44887346 aacaagcaaaaatgaaatatatattagaaacaaaaagagaaatctcaagcacaaggtgtgctagagaaaa 44887415  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 9387535 - 9387592
Alignment:
Q  317 aacaatcaaaaatagaatatatatttgaaa--cacaagagaattctcaagcacaaggt 372  Q
    ||||||||||||| ||||||||||| ||||  || ||||||| |||||||||||||||    
T  9387535 aacaatcaaaaattgaatatatattagaaacccaaaagagaagtctcaagcacaaggt 9387592  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 2601878 - 2601837
Alignment:
Q  335 atatatttgaaacacaagagaattctcaagcacaaggtgtgc 376  Q
    |||||||  |||| ||||||||||||||||||||||||||||    
T  2601878 atatattaaaaacgcaagagaattctcaagcacaaggtgtgc 2601837  T

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