View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_14 (Length: 432)
Name: NF0845_low_14
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 38830646 - 38830979
Alignment:
| Q |
9 |
caacaatatctattttcaaaattgtataatatatgttgagagtgattaactctttaaaattgtaaggagttattctaaaaatagcttaatttacaacaac |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38830646 |
caacaaaatctattttcaaaattgtataatatatgttgagagtgattaactctttaaaattgtaaggagttattctaaaaatagcttaatttacaacaaa |
38830745 |
T |
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| Q |
109 |
nnnnnnn--ctaccaaaaatagttattccaacaataaggttatgagatatatctctctcttgcttacagtatacccgtgagttcttttgcattcaaaaac |
206 |
Q |
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| T |
38830746 |
aaaaaaaaactaccaaaaatagttattccaacaa---ggttatgagatatatctctctcttgcttacagtatacccgtgagttcttttgcattcaaaaac |
38830842 |
T |
|
| Q |
207 |
ttgttaagactaaatataaagatagcgacagatcattcaaggttagctcagcttcacatgaacttcctattacctaaatcataaggtattgccatgtgct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38830843 |
ttgttaagactaaatataaagatagcgacagatcattcaaggttagctcagcttcacatgaacttcctattacctaaatcataaggtattgccatgtgct |
38830942 |
T |
|
| Q |
307 |
taaagaaggagaaaaaacctagcgcaagtggttagtg |
343 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38830943 |
taaagaaggagaaaaaacctagcgcaagtggttagtg |
38830979 |
T |
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