View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_16 (Length: 402)
Name: NF0845_low_16
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 6394128 - 6393843
Alignment:
| Q |
1 |
ataagtgttgctatacactgatatgtcccacttttatttttatttatgatttgtgaatgtgaaaatgtggagtttgaaaatataacaatcttcattgaga |
100 |
Q |
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| T |
6394128 |
ataagtgttgctatacactgatatgtcccacttttatttttatttatgatttgtgaatgtgaaaatgtggagtttgaaaatataacaatcttcattgaga |
6394029 |
T |
|
| Q |
101 |
ctattggatttggctttattcttgttggtgttttttctctgataaattgtcagttttatttaaatctttacatgttagtgaagttatcgtcttgattttg |
200 |
Q |
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| T |
6394028 |
ctattggatttggctttattcttgttggtgttttttctctgataaattgtcagttttatttaaatctttacatgttagtgaagttatcgtcttgattttg |
6393929 |
T |
|
| Q |
201 |
tttctttgtgaaaaatactatgtatgatatttcggatgggtcattcctgcctcttttgaaatgagataagaatctaatgatgatgt |
286 |
Q |
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| T |
6393928 |
tttctttgtgaaaaatactatgtatgatatttcggatgtgtcattcctgcctcttttaaaatgagataagaatctaatgatgatgt |
6393843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 14819567 - 14819477
Alignment:
| Q |
130 |
gttttttctctgataaattgtcagttttatttaaatctttacatgttagtgaagttatcgtcttgattttgtttctttgtgaaaaatactat |
221 |
Q |
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| T |
14819567 |
gttttttc-ctgataaattggcggttttattgaaatctttacatgttagtaactttattttcttcattttgtttctttgtaaaaaatactat |
14819477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 8914600 - 8914644
Alignment:
| Q |
72 |
gtttgaaaatataacaatcttcattgagactattggatttggctt |
116 |
Q |
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| T |
8914600 |
gtttgaaaatataataatcttcattgagactattggatttggctt |
8914644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 15092743 - 15092801
Alignment:
| Q |
163 |
aatctttacatgttagtgaagttatcgtcttgattttgtttctttgtgaaaaatactat |
221 |
Q |
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| T |
15092743 |
aatctttacatgttagtaaagttattgtcttgattttgtttctttatgaaaaatactat |
15092801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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