View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_18 (Length: 381)
Name: NF0845_low_18
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 31 - 369
Target Start/End: Complemental strand, 25428352 - 25428018
Alignment:
| Q |
31 |
acaatcaagggatacaaatgattgaaattcaaaagatcagaagcaagatcatgacgacacttgaagcaaagattcagaaaacaccaaaataattgatggg |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25428352 |
acaatcaagggatacaaatgattgaaattcaaaagatcagaagcaagatcatgacgacacttgaagcaaagattcagaaaacaccaaaataattgatggg |
25428253 |
T |
|
| Q |
131 |
aggaacatgcctagttatgcaccaaaaggtcataatcaaagattagaagcttaaagtccaagcacaaggaataacaaccatttttaaaagtttcttggtc |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25428252 |
aggaacatgcctagttatgcaccaaaaggtcataatcaaagattagaagcttaaagtccaagcacaaggaataacaactatttttaaaagtttcttggtc |
25428153 |
T |
|
| Q |
231 |
accaaggcaagccattaaaggacnnnnnnncagatagttttccaatggctaatttccttactttttcaccaagacaaagctctctataagcactccatca |
330 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25428152 |
accaaggcaagccattaaaggacaaaaaaacagatagttttccaatggctaatttccttactttttcaccaagacaaagctctctataagcactccatca |
25428053 |
T |
|
| Q |
331 |
ttcaagacaaacatatctttccacaacatctctcatatt |
369 |
Q |
| |
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|||||| |||| |||||||||||||||||||||||| |
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| T |
25428052 |
ttcaag----acatgtctttccacaacatctctcatatt |
25428018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 13185004 - 13184951
Alignment:
| Q |
318 |
aagcactccatcattcaagacaaacat--atctttccacaacatctctcatatt |
369 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||| |||||||||||| |
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| T |
13185004 |
aagcactccatcattcaagagaaacatgaatctctccacaaaatctctcatatt |
13184951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 33385814 - 33385863
Alignment:
| Q |
94 |
aagcaaagattcagaaaacaccaaaataattgatgggaggaacatgccta |
143 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| || |||||||||| |
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|
| T |
33385814 |
aagcaatgattcaaaaaacaccaaaataattgatggaagaaacatgccta |
33385863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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