View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0845_low_19 (Length: 370)

Name: NF0845_low_19
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0845_low_19
NF0845_low_19
[»] chr3 (1 HSPs)
chr3 (26-341)||(42295211-42295524)
[»] chr1 (2 HSPs)
chr1 (50-297)||(20424198-20424444)
chr1 (50-340)||(43805934-43806222)
[»] chr4 (2 HSPs)
chr4 (56-283)||(11367636-11367862)
chr4 (104-286)||(21407696-21407877)
[»] chr5 (1 HSPs)
chr5 (50-292)||(20424090-20424331)
[»] chr7 (1 HSPs)
chr7 (59-259)||(49046146-49046345)
[»] chr2 (2 HSPs)
chr2 (50-259)||(21266802-21267010)
chr2 (59-286)||(15634443-15634669)
[»] scaffold0037 (1 HSPs)
scaffold0037 (104-274)||(108910-109079)
[»] chr6 (1 HSPs)
chr6 (59-159)||(13188047-13188147)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 26 - 341
Target Start/End: Complemental strand, 42295524 - 42295211
Alignment:
Q  26 agaagtgatttgtagtatttttcgtcaattaaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagat 125  Q
    |||||||| ||||| |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||    
T  42295524 agaagtgaattgtattatttt-cgtcaattaaaataggtgtaccaatagccccagcaatctcaaaaaggaatttagggtgccaatactctagagggagat 42295426  T
Q  126 aatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgatttcggatttcaagt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  42295425 aatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgattccgga-ttcaagt 42295327  T
Q  226 tccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaatcggaattcaaagaaacctcgacacaagggaatcattttccattgattaat 325  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  42295326 tccaagtgtcattcgatcagacacttctaagatcttccgcacatgagaatcggaattcaaagaaacctcgacacaagggaatcattttcctttgactaat 42295227  T
Q  326 gggtttctacaattgc 341  Q
    ||||||||||||||||    
T  42295226 gggtttctacaattgc 42295211  T

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Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 50 - 297
Target Start/End: Complemental strand, 20424444 - 20424198
Alignment:
Q  50 tcaattaaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgac 149  Q
    |||||||||||||| |||||||||||| |  |||||||||||||   | |||| |||||||| ||||||||||||||||| ||||| | ||| || ||||    
T  20424444 tcaattaaaataggcgtaccaatagcccctgcaatctcaaaaagagttataggttgccaatattccagagggagataatgaaaacgcaaccaaacctgac 20424345  T
Q  150 tatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgatttcggatttcaagttccaagtgtcattcgaccatacac 249  Q
    |||||||||| || |||||||| |||||||||||  |||||||||| ||||| |||||| |   | |  ||||||||||||||  |||||||||| ||||    
T  20424344 tatgagtttgtttctgattaaatgaattaaaatccggtgaccaacgggataatcgtaac-agccccggcttcaagttccaagttccattcgaccaaacac 20424246  T
Q  250 ttctaagatcttccgcacatgagaatcggaattcaaagaaacctcgac 297  Q
    |||||||||| ||  ||||||||||||||||||| || ||||||||||    
T  20424245 ttctaagatcatcaacacatgagaatcggaattcgaaaaaacctcgac 20424198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 50 - 340
Target Start/End: Original strand, 43805934 - 43806222
Alignment:
Q  50 tcaattaaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgac 149  Q
    |||||||  ||||| |||||||||||  || ||||||||||||||| | ||   |||||||| |||||||| | |||||| ||||| || ||||||||||    
T  43805934 tcaattattataggggtaccaatagcaccagcaatctcaaaaaggattctatcttgccaatattccagaggaaaataatgaaaacgcactcatacttgac 43806033  T
Q  150 tatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgatttcggatttcaagttccaagtgtcattcgaccatacac 249  Q
    |||||||||||   |||  ||||| |||||||||  | ||||| || |||||||||||| ||   || || ||| ||||||||| |||||||||| || |    
T  43806034 tatgagtttgagcctgaacaaagggattaaaatccggagacca-cgtgataaacgtaacaatcctggctt-caaattccaagtgccattcgaccagacgc 43806131  T
Q  250 ttctaagatcttccgcacatgagaatcggaattcaaagaaacctcgacacaagggaatcattttccattgattaatgggtttctacaattg 340  Q
    |||||||||| ||  |||| |||||||| |||||||| ||||| | || || ||||||||| |||||||||| ||  |||||| |||||||    
T  43806132 ttctaagatcatcaacacaggagaatcgaaattcaaaaaaacccctacccatgggaatcatcttccattgatcaagaggtttccacaattg 43806222  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 283
Target Start/End: Complemental strand, 11367862 - 11367636
Alignment:
Q  56 aaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgag 155  Q
    ||||||||||| ||||||| | |  ||||||| ||||||| | | || |||||||| |||||||| |||||||| ||||| |||||||| || |||||||    
T  11367862 aaaataggtgtgccaatagtccctgcaatctcgaaaaggattctcggatgccaatattccagaggaagataatgaaaacgcacccatacctggctatgag 11367763  T
Q  156 tttgattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaa 255  Q
    |||||||||||||||| | |||||||||  ||||||||||| ||||||| |||     |||| |||||||||||||   |||||||||| || |||||||    
T  11367762 tttgattatgattaaatggattaaaatcaggtgaccaacgaaataaacgcaacagacccgga-ttcaagttccaagcaccattcgaccagacgcttctaa 11367664  T
Q  256 gatcttccgcacatgagaatcggaattc 283  Q
    |||| ||   |||||||||||| |||||    
T  11367663 gatcatcaatacatgagaatcgaaattc 11367636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 104 - 286
Target Start/End: Complemental strand, 21407877 - 21407696
Alignment:
Q  104 tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaac 203  Q
    |||||||| |||| ||| |||||||  ||| | |||||||| || |||||||||||| | ||| |||||| |||||||||| | ||||| || ||||||     
T  21407877 tgccaatattccataggaagataattaaaatgcacccatacctgcctatgagtttgagtctgaataaagggattaaaatctggcgaccagcgtgataaaa 21407778  T
Q  204 gtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaatcggaattcaaa 286  Q
    ||||| |||  || || ||||||||||| | |||||||||| |||||||| ||||| || |||||||||||| | ||||||||    
T  21407777 gtaacaattatggctt-caagttccaagcgccattcgaccagacacttctgagatcatcagcacatgagaattgaaattcaaa 21407696  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 292
Target Start/End: Complemental strand, 20424331 - 20424090
Alignment:
Q  50 tcaattaaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgac 149  Q
    ||||||| |||||| |||||||| ||| || | ||||||||||||| | ||   |||||||| ||||| || |||||||| || || |||||||| ||||    
T  20424331 tcaattataataggcgtaccaatggccccagcgatctcaaaaaggattctatcttgccaatattccagtggaagataatgaaatcgtacccatacctgac 20424232  T
Q  150 tatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgatttcggatttcaagttccaagtgtcattcgaccatacac 249  Q
    |||  |||||| | |||||| ||| |||||||||  | |||||||| ||||| |||||| | | |||  ||||||||||||| | |||||||||||||||    
T  20424231 tattggtttgagtctgattagagggattaaaatccggagaccaacgcgataagcgtaac-actccgggcttcaagttccaagcgccattcgaccatacac 20424133  T
Q  250 ttctaagatcttccgcacatgagaatcggaattcaaagaaacc 292  Q
    |||||||||| || ||  ||||||| || |||||||| |||||    
T  20424132 ttctaagatcatcagcggatgagaagcgaaattcaaaaaaacc 20424090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 259
Target Start/End: Complemental strand, 49046345 - 49046146
Alignment:
Q  59 ataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgagttt 158  Q
    ||||| ||||||||||||||| ||||||||||||||| | ||   |||||||| ||||  || |||||||| ||||  |||||||  |||||||| ||||    
T  49046345 ataggggtaccaatagcctcatcaatctcaaaaaggattctatcatgccaatattccaatggaagataatgaaaacatacccatatctgactatgggttt 49046246  T
Q  159 gattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagat 258  Q
    || | |||||| ||  ||||||||| || ||| |||| ||||  |||||| | | | |  ||||||||||||| |||||||||||| ||| |||||||||    
T  49046245 gagtctgattagagagattaaaatccagagacaaacgcgatatgcgtaac-aatccaggcttcaagttccaagcgtcattcgaccagacatttctaagat 49046147  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 259
Target Start/End: Complemental strand, 21267010 - 21266802
Alignment:
Q  50 tcaattaaaataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgac 149  Q
    |||||||  ||||| |||||||||||| || | ||||||||||||| || |   |||||||| || |  || |||||||| ||||| |||||||| | ||    
T  21267010 tcaattattataggggtaccaatagccccagctatctcaaaaaggatttcatcttgccaatattctaatggaagataatgaaaacggacccatacctaac 21266911  T
Q  150 tatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgatttcggatttcaagttccaagtgtcattcgaccatacac 249  Q
    |||| |||||| | ||||||  |  |||||||||  | |||||||| ||||| |||||| | | | |  ||||||||||||  |||||||||||| ||||    
T  21266910 tatgggtttgagtctgattagggagattaaaatccggagaccaacgcgataagcgtaac-aatccaggcttcaagttccaaaagtcattcgaccaaacac 21266812  T
Q  250 ttctaagatc 259  Q
    ||||||||||    
T  21266811 ttctaagatc 21266802  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 286
Target Start/End: Complemental strand, 15634669 - 15634443
Alignment:
Q  59 ataggtgtaccaatagcctcaacaatctcaaaaaggaatttagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgagttt 158  Q
    ||||| |||||||||||| || |||||||||| |    |  ||| |||||||| || | ||| |||||||  |||||||||||||| |||||||||||||    
T  15634669 ataggcgtaccaatagccccagcaatctcaaataaagttaaaggttgccaataatctaaaggaagataataaaaacgaacccatacctgactatgagttt 15634570  T
Q  159 gattatgattaaaggaattaaaatctagtgaccaacgagataaacgtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagat 258  Q
    | || ||  |  | ||| |||| ||| | ||||||||||| |   ||| | || |||| ||||||||||||||   |||  ||||| |||||||||||||    
T  15634569 gtttttggctggaagaaataaattctggagaccaacgagaaagctgtagcaatctcgg-tttcaagttccaagcaccatgtgaccagacacttctaagat 15634471  T
Q  259 cttccgcacatgagaatcggaattcaaa 286  Q
    | |||||||| ||||| || ||||||||    
T  15634470 catccgcacaagagaaacgaaattcaaa 15634443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 274
Target Start/End: Complemental strand, 109079 - 108910
Alignment:
Q  104 tgccaatactccagagggagataatggaaacgaacccatacttgactatgagtttgattatgattaaaggaattaaaatctagtgaccaacgagataaac 203  Q
    ||||||||||| ||||| |||||||  ||||| |||||||| |||||||||||||| || ||  |  | ||| |||| ||| | ||||||||||| |  |    
T  109079 tgccaatactctagaggaagataataaaaacggacccatacctgactatgagtttgtttttggctggaagaaataaattctggagaccaacgagaaagcc 108980  T
Q  204 gtaacgatttcggatttcaagttccaagtgtcattcgaccatacacttctaagatcttccgcacatgagaa 274  Q
    ||| | ||  ||| ||||||||||||||   |||| ||||||| | |||||||||| |||||||| |||||    
T  108979 gtagcaatcccgg-tttcaagttccaagcaccatttgaccatatatttctaagatcatccgcacaagagaa 108910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 13188047 - 13188147
Alignment:
Q  59 ataggtgtaccaatagcctcaacaatctcaaaaaggaatt-tagggtgccaatactccagagggagataatggaaacgaacccatacttgactatgagtt 157  Q
    ||||| || ||||||||| |||||||||||||  | |||| |||| |||||||| |||| ||| |||||||| |||| |||||||||  |||||||||||    
T  13188047 ataggcgtgccaatagccccaacaatctcaaat-gaaattctaggttgccaatattccaaaggaagataatgaaaacaaacccatacccgactatgagtt 13188145  T
Q  158 tg 159  Q
    ||    
T  13188146 tg 13188147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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