View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0845_low_2 (Length: 746)

Name: NF0845_low_2
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0845_low_2
NF0845_low_2
[»] chr6 (8 HSPs)
chr6 (1-399)||(29462365-29462758)
chr6 (394-533)||(29462783-29462921)
chr6 (47-275)||(29420686-29420912)
chr6 (642-746)||(29463373-29463476)
chr6 (531-608)||(29462955-29463031)
chr6 (171-275)||(29607935-29608038)
chr6 (26-102)||(29608053-29608129)
chr6 (26-113)||(29404531-29404618)
[»] chr3 (1 HSPs)
chr3 (50-108)||(8088979-8089037)
[»] chr8 (1 HSPs)
chr8 (556-601)||(32011650-32011695)
[»] chr1 (1 HSPs)
chr1 (556-601)||(37408514-37408559)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 29462365 - 29462758
Alignment:
Q  1 aacatctaacatgcacataatagcgaaagaatattgaaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaacta 100  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29462365 aacatctaacatgtacataatagtgaaagaagattgaaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaacta 29462464  T
Q  101 cttcgattgagggaattgttaatatcatcattggttaacaatattgtagcttcgattatagacacataggtaagaattacaacaatcccagaaagaagaa 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  29462465 ctacgattgagggaattgttaatatcatcattggttaacaatattgtagcttcaattatagccacataggtaagaattacaacaatcccagaaagaagaa 29462564  T
Q  201 gaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggttgcgtagcttgggcccttataaataatatagtggaacttaattatg 300  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29462565 gaatatttcgtgccatgact----tttgtatatttgcttcatttcaaccaaggttgcgtagcttgggcccttataaataatatagtggaacttaattatt 29462660  T
Q  301 tgtgctgttaaactcaaatagttaaagaataattaagatcactctcaagannnnnnnnnnaattaagatcaataattggccgaaggcagagattatata 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  29462661 tgtgctgttaaactcaaatagttaaagaataattaagatcactctcaaga-tttttttttaattaagatcaataattggccgaaggcagagattatata 29462758  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 394 - 533
Target Start/End: Original strand, 29462783 - 29462921
Alignment:
Q  394 tatatatcatgtgactgggcccttacattacgattttatatattcccactcatttttgtcaaaaaaggtattgaacttaaatgaacaaaataatattata 493  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29462783 tatatatcatgtgactgggcc-ttacaatacgattttatatattcccactcatttttgtcaaaaaaggtattgaacttaaacgaacaaaataatattata 29462881  T
Q  494 ccaacatttcttaccaaaatgaacaaaatatatcacgaca 533  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29462882 ccaacatttcttaccaaaatgaacaaaatatatcacgaca 29462921  T

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Target: chr6; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 47 - 275
Target Start/End: Complemental strand, 29420912 - 29420686
Alignment:
Q  47 agtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgagggaattgttaatatcatcattggttaacaatattg 146  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29420912 agtacctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggttaacaatattg 29420813  T
Q  147 tagcttcgattatagacacataggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttca 246  Q
    ||||||| ||||||| |||| |  ||||||| ||||| || |  |  |||||||||| ||||  | ||||||||||||||| |||||||| ||| |||||    
T  29420812 tagcttcaattatagccacacaactaagaatcacaacgattcttgggagaagaagaagatttaataccatgactatagtttatatatttg-ttcctttca 29420714  T
Q  247 accaaggttgcgtagcttgggcccttata 275  Q
     ||||  ||| |||||||||||| |||||    
T  29420713 gccaa-attgtgtagcttgggccattata 29420686  T

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Target: chr6; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 642 - 746
Target Start/End: Original strand, 29463373 - 29463476
Alignment:
Q  642 aaacggctcatataatgatactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaaggaaagtaggata 741  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29463373 aaacagctcatataat-atactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaagtaaagtaggata 29463471  T
Q  742 cctat 746  Q
    |||||    
T  29463472 cctat 29463476  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 531 - 608
Target Start/End: Original strand, 29462955 - 29463031
Alignment:
Q  531 acatttggcttcttaaaaaagaataactttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt 608  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29462955 acatttggcttcttaaaaaagaataa-tttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt 29463031  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 29608038 - 29607935
Alignment:
Q  171 taagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggttgcgtagcttgggccc 270  Q
    ||||||| |||||||  || ||||||||||||||||||  |||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  29608038 taagaatcacaacaactcctgaaagaagaagaatatttaatgccatgactatagttcgtatatttgcttca-ttcaaccaaagttgcgtagcttgggccc 29607940  T
Q  271 ttata 275  Q
    |||||    
T  29607939 ttata 29607935  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 29608129 - 29608053
Alignment:
Q  26 aaagaatattgaaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactact 102  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||| ||||| |||| |||| |||| ||||||||||    
T  29608129 aaagaatattaaaatatttggagtacctggtaagctgatgaagcttttccagaaattaaacattctaggaaactact 29608053  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 29404618 - 29404531
Alignment:
Q  26 aaagaatattgaaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgaggg 113  Q
    ||||| ||||||||   ||||| ||||||||||||||| || |||||||||||||| ||||| ||||| |||||||| || |||||||    
T  29404618 aaagattattgaaaattttggactacctggtaagctgaagaagctgttccaaaaatgaaaccatctggaaaactactccggttgaggg 29404531  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 8089037 - 8088979
Alignment:
Q  50 acctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgatt 108  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||| ||| ||||    
T  8089037 acctggtaagctgaagatgctgttccaaaaacaaaatcttctgggaaactgctttgatt 8088979  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 601
Target Start/End: Original strand, 32011650 - 32011695
Alignment:
Q  556 actttctctccggttagtcctttcatcaaaggatgaactaagtttt 601  Q
    |||||||||| | ||||||||||||||||||||| | |||||||||    
T  32011650 actttctctctgtttagtcctttcatcaaaggatcagctaagtttt 32011695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 601
Target Start/End: Complemental strand, 37408559 - 37408514
Alignment:
Q  556 actttctctccggttagtcctttcatcaaaggatgaactaagtttt 601  Q
    |||||||||| | ||||||||||| ||||||||| |||||||||||    
T  37408559 actttctctctgtttagtcctttcgtcaaaggatcaactaagtttt 37408514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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