View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0845_low_20 (Length: 366)
Name: NF0845_low_20
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_20 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 78 - 366
Target Start/End: Original strand, 42118787 - 42119076
Alignment:
| Q |
78 |
attgtaatttggaaagatgtgagatttgagttggaatttcacctttaaaggaag-tatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact |
176 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42118787 |
attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact |
42118886 |
T |
|
| Q |
177 |
tagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttacctgt |
276 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42118887 |
tagaatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttaccagt |
42118986 |
T |
|
| Q |
277 |
aaggcgttcaaagccaaggttgagaccaatcacgtgaccagtgactctgtcacacgtgacaccatgccatgatgagcagcaatcagtccc |
366 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42118987 |
aaggcgttaaaagccaaggttgagaccaatcacgtgaccagagactctgacacacgcgacaccatgccatgatgagcagcaatcagtccc |
42119076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 62 - 366
Target Start/End: Original strand, 42125373 - 42125674
Alignment:
| Q |
62 |
ccagagagataaagtgattgtaatttggaaagatgtgagatttgagttggaatttcacctttaaaggaagtatgagacaagtcaagatgtgtaagactca |
161 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||| || || |||||||||||||||||| |||||||| |
|
|
| T |
42125373 |
ccagagagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactca |
42125472 |
T |
|
| Q |
162 |
aaaaaccaccaaacttagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttagg |
261 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| ||||||| |||| | |||||| |||||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
42125473 |
taaacccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttagg |
42125572 |
T |
|
| Q |
262 |
atgtaatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgaccagtgactctgtcacacgtgacaccatgccatgatgagcagcaatca |
361 |
Q |
| |
|
||||| ||||||| ||||| |||| ||||||| ||||| ||||||||||||| ||||| | |||||||||||||||| || |||||||||||||| |
|
|
| T |
42125573 |
atgtagtttaccttgaaggccttcacagccaagattgaggccaatcacgtgacgagtgatggtatcacacgtgacaccattcc---atgagcagcaatca |
42125669 |
T |
|
| Q |
362 |
gtccc |
366 |
Q |
| |
|
||||| |
|
|
| T |
42125670 |
gtccc |
42125674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 63 - 366
Target Start/End: Original strand, 42130599 - 42130899
Alignment:
| Q |
63 |
cagagagataaagtgattgtaatttggaaagatgtgagatttgagttggaatttcacctttaaaggaagtatgagacaagtcaagatgtgtaagactcaa |
162 |
Q |
| |
|
||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
42130599 |
cagagagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctg |
42130698 |
T |
|
| Q |
163 |
aaaaccaccaaacttagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttagga |
262 |
Q |
| |
|
||| |||| ||||||| |||||||| ||||| | |||||| |||| | | |||||| ||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
42130699 |
aaatccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattagga |
42130798 |
T |
|
| Q |
263 |
tgtaatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgaccagtgactctgtcacacgtgacaccatgccatgatgagcagcaatcag |
362 |
Q |
| |
|
| ||| |||||||||||| |||| ||||||||||||| ||||||||||||||| |||| ||||||||||||| |||| || ||||||||||||||| |
|
|
| T |
42130799 |
ttgaatgtacctgtaaggccttcacagccaaggttgaggtcaatcacgtgaccagagactgtgtcacacgtgacgccattcc---atgagcagcaatcag |
42130895 |
T |
|
| Q |
363 |
tccc |
366 |
Q |
| |
|
|||| |
|
|
| T |
42130896 |
tccc |
42130899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 64 - 348
Target Start/End: Complemental strand, 41712014 - 41711730
Alignment:
| Q |
64 |
agagagataaagtgattgtaatttggaaagatgtgagatttgagttggaatttcacctttaaaggaagtatgagacaagtcaagatgtgtaagactcaaa |
163 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||| ||||||||||||||| |||| || ||| ||||| ||||||||||| |||||||||| |
|
|
| T |
41712014 |
agagagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaa |
41711915 |
T |
|
| Q |
164 |
aaaccaccaaacttagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggat |
263 |
Q |
| |
|
|| | ||||||||||||||||||| | ||| ||||||| |||| | | |||||| ||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
41711914 |
aaccgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggat |
41711815 |
T |
|
| Q |
264 |
gtaatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgaccagtgactctgtcacacgtgacaccatgccatga |
348 |
Q |
| |
|
| ||| ||||| ||||| ||| ||||||||||||| |||| |||| ||||| ||| ||||||| |||||||| ||||||| |
|
|
| T |
41711814 |
ggaatataccttgaaggccatcacagccaaggttgaggccaaccacgcgaccatagacggtgtcacatgtgacaccgggccatga |
41711730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 32 - 366
Target Start/End: Complemental strand, 34239120 - 34238786
Alignment:
| Q |
32 |
aaggtgatctctttccaaactaacccatt---cccagagagataaagtgattgtaatttggaaagatgtgagatttgagttggaatttcacctttaaagg |
128 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||||| |||| ||||||||||||||||||||| | ||||||||||| ||||||||||| || |
|
|
| T |
34239120 |
aaggtggtctctttccaaactaactcataatgcccagaaagatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttcaccgccaacat |
34239021 |
T |
|
| Q |
129 |
aagtatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaacttagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttg |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| | ||||||||||||| |||| || || ||||| |||| | |||||| |||||||| |
|
|
| T |
34239020 |
gagtattagacaagtcaagatgtgtaagactcgtaaacctgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttg |
34238921 |
T |
|
| Q |
229 |
gagatgaacaagatggaaaagggtattgttaggatgtaatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgaccagtgactctgtca |
328 |
Q |
| |
|
||||||||||| || |||||||||| | |||||||| | | ||||| || || |||| | |||||||| || ||||| |||||||||| || ||||| |
|
|
| T |
34238920 |
gagatgaacaatattgaaaagggtactattaggatggagtataccttgaaagccttcacaaccaaggttaaggccaatgacgtgaccagatacggtgtca |
34238821 |
T |
|
| Q |
329 |
cacgtgacaccatgccatgatgagcagcaatcagtccc |
366 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34238820 |
cacgtgacaccatgcc---atgagcagcaatcagtccc |
34238786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 366
Target Start/End: Complemental strand, 34231079 - 34230731
Alignment:
| Q |
30 |
tcaaggtgatctctttccaaactaacc---cattcccagagagataaagtgattgtaatttggaaagatgtgagatttgagttggaatttcacctttaaa |
126 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||| ||||||||||||||||||||| | |||||||||| ||||||||| ||| ||| |
|
|
| T |
34231079 |
tcaaggtagtctctttccaaactaacttatcattcccagaaagatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaa |
34230980 |
T |
|
| Q |
127 |
ggaagtatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaacttagaatgaaaacgagagcc------------ggagaaattattggatgca |
214 |
Q |
| |
|
| || | ||||||||| |||||||||||||||| ||| || |||||||||||||||||| | ||||| ||||||| |||| | | |
|
|
| T |
34230979 |
gaaacaagaagacaagtcgagatgtgtaagactcataaacccgccaaacttagaatgaaaatgggagccagagaaatcgttagagaaataattgttcgaa |
34230880 |
T |
|
| Q |
215 |
aggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatgtaatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgac |
314 |
Q |
| |
|
||||| || |||| || ||| ||||||||||||||||| | |||||||| | | ||||| || || |||| |||||||||| || ||||| ||||||| |
|
|
| T |
34230879 |
aggttgagcatttgaaggtgagcaagatggaaaagggtactattaggatggagtataccttgaaagccttcacagccaaggttaaggccaatgacgtgac |
34230780 |
T |
|
| Q |
315 |
cagtgactctgtcacacgtgacaccatgccatgatgagcagcaatcagtccc |
366 |
Q |
| |
|
||| || ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34230779 |
cagatacggtgtcacacgtgacaccatgcc---atgagcagcaatcagtccc |
34230731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 136 - 348
Target Start/End: Complemental strand, 41570172 - 41569960
Alignment:
| Q |
136 |
agacaagtcaagatgtgtaagactcaaaaaaccaccaaacttagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttggagatga |
235 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||| |||||| ||| ||| | |||||| |||| | |||||| |||| |||||||||| |
|
|
| T |
41570172 |
agacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatga |
41570073 |
T |
|
| Q |
236 |
acaagatggaaaagggtattgttaggatgtaatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgaccagtgactctgtcacacgtga |
335 |
Q |
| |
|
||||||| ||||| || |||||||||| | ||||||| ||||| |||| ||||||||| ||||||||||||| |||||| ||| ||| ||||||| |
|
|
| T |
41570072 |
gcaagatgaaaaagagtgttgttaggataaattttaccttgaaggcattcacagccaaggtcgagaccaatcacgcgaccagagacagcgtcgcacgtga |
41569973 |
T |
|
| Q |
336 |
caccatgccatga |
348 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41569972 |
caccatgccatga |
41569960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 366
Target Start/End: Original strand, 11120115 - 11120448
Alignment:
| Q |
30 |
tcaaggtgatctctttccaaactaacccattcccagagagataaagtgattgtaatttggaaagatgtgagatttgagttggaatttcacctttaaagga |
129 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | || | |
|
|
| T |
11120115 |
tcaaggtgatctctttcaaaactaactcattcccagagagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgtt |
11120214 |
T |
|
| Q |
130 |
agtatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaacttagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttgg |
229 |
Q |
| |
|
| ||| |||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
11120215 |
actataagacaagtaaagatgtgtaagactctgaaacccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttgg |
11120314 |
T |
|
| Q |
230 |
agatgaacaagatggaaaagggtattgttaggatgtaatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgaccagtgactctgtcac |
329 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||||| | ||| ||| | |||| ||||||| ||||| ||||||||| |||||| || |||| | |
|
|
| T |
11120315 |
agatgaacaagatggaaaagggtactattcggatgtaatatgccttgaagaccttcacagccaagattgaggccaatcacgcgaccagagatggtgtcgc |
11120414 |
T |
|
| Q |
330 |
acgtgacaccatgccatgatgagcagcaatcagtccc |
366 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |
|
|
| T |
11120415 |
acgtgacaccattcc---atgagcagcaatcagtccc |
11120448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 61 - 348
Target Start/End: Original strand, 8524827 - 8525114
Alignment:
| Q |
61 |
cccagagagataaagtgattgtaatttggaaagatgtgagatttgagttggaatttcacctttaaaggaagtatgagacaagtcaagatgtgtaagactc |
160 |
Q |
| |
|
||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |||||| |
|
|
| T |
8524827 |
cccagagagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactc |
8524926 |
T |
|
| Q |
161 |
aaaaaaccaccaaacttagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttag |
260 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||| ||||||| |||| |||||||| ||| |||| | || | ||||||||||||||||| |||||| |
|
|
| T |
8524927 |
aaaaacccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttag |
8525026 |
T |
|
| Q |
261 |
gatgtaatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgaccagtgactctgtcacacgtgacaccatgccatga |
348 |
Q |
| |
|
||| | | | ||| ||| | |||| ||||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
8525027 |
gattgagtatgccttgaagaccttcacagccaaggttgaggccaatcacgtgaccactgatggtgtcacacgtgacaccatcccatga |
8525114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 65 - 366
Target Start/End: Original strand, 12250197 - 12250495
Alignment:
| Q |
65 |
gagagataaagtgattgtaatttggaaagatgtgagatttgagttggaatttcacctttaaaggaagtatgagacaagtcaagatgtgtaagactcaaaa |
164 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||| | || | |
|
|
| T |
12250197 |
gagagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaaga |
12250296 |
T |
|
| Q |
165 |
aaccaccaaacttagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatg |
264 |
Q |
| |
|
| ||||||||||||||||||||| | ||| ||||||| |||||| | |||||| ||||||||||||||| |||||| |||||||||| | ||||| || |
|
|
| T |
12250297 |
atccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttg |
12250396 |
T |
|
| Q |
265 |
taatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgaccagtgactctgtcacacgtgacaccatgccatgatgagcagcaatcagtc |
364 |
Q |
| |
|
|||| |||| ||||| |||| |||||||| ||| |||||||| |||||| || | ||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
12250397 |
taatataccatcaaggccttcatcgccaaggtcgaggccaatcacatgaccatagattgtgtcacatgtgacaccatgcc---atgagcagcaatcagtc |
12250493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 61 - 316
Target Start/End: Complemental strand, 25521253 - 25520998
Alignment:
| Q |
61 |
cccagagagataaagtgattgtaatttggaaagatgtgagatttgagttggaatttcacctttaaaggaagtatgagacaagtcaagatgtgtaagactc |
160 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| || || |||||||| |||||||||||||||| |
|
|
| T |
25521253 |
cccagaaagatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactc |
25521154 |
T |
|
| Q |
161 |
aaaaaaccaccaaacttagaatgaaaacgagagccggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttag |
260 |
Q |
| |
|
||| ||||||||||||| ||||||| | ||||| | ||||| |||| | | |||||| ||| |||| | |||| ||||||||||||| ||| | |||| |
|
|
| T |
25521153 |
tgaaacccaccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattag |
25521054 |
T |
|
| Q |
261 |
gatgtaatttacctgtaaggcgttcaaagccaaggttgagaccaatcacgtgacca |
316 |
Q |
| |
|
|||| ||| ||||| |||| |||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
25521053 |
gatggaatataccttggaggccttcacagccaaggttgaggccaatcacgcgacca |
25520998 |
T |
|
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