View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0845_low_22 (Length: 359)
Name: NF0845_low_22
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0845_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 146 - 296
Target Start/End: Original strand, 260085 - 260235
Alignment:
| Q |
146 |
gcaaataataataaggtaaccgttccataaaatgaaaaaaggaaattctacttccatttattcattttgggtgtgatacatatacgtaaaaagttgttca |
245 |
Q |
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| T |
260085 |
gcaaataataataaggtaaccactccataaaatgaaaaaaggacattctacttccatttattcattttgggcgtgatacatatacgtaaaaagttgttca |
260184 |
T |
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| Q |
246 |
gcttgccgaattgttacacgaaaaaataaacattcattaaactagggtggt |
296 |
Q |
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| T |
260185 |
gcttgccgaattgttacacgaaaaaataaacattcattaaactagggtggt |
260235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 259630 - 259499
Alignment:
| Q |
35 |
atcaagacttgaaatccaacggaaggaactcaaatcaaaagaggggcaatttgaagaaagagagaatgtgcttgagtcaaatgagaaggactatgatgaa |
134 |
Q |
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||||||| ||||||||||| ||||||||||||||| ||| |||| ||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
259630 |
atcaagatttgaaatccaatggaaggaactcaaattaaaggaggagcaatatgaagatagagagaaggtgcttgagtcaaatgagaaggactttgatgaa |
259531 |
T |
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| Q |
135 |
agattgaaggagcaaataataataaggtaacc |
166 |
Q |
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| T |
259530 |
agattgaaggagcaaataataataaagtaacc |
259499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 259989 - 260086
Alignment:
| Q |
12 |
agagagcaagtgatgaagcataaatcaagacttgaaatccaa----cggaaggaactcaaatcaaaagaggggcaatttgaagaaagagagaatgtgc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
259989 |
agagagcaagtgatgaagcataaatcaagacttgaaatccaaccaacggaaggaactcaaatcaaaagaggggcaatttgaagaaagagagaatgtgc |
260086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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