View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0845_low_26 (Length: 337)

Name: NF0845_low_26
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0845_low_26
NF0845_low_26
[»] chr5 (15 HSPs)
chr5 (97-313)||(26212248-26212460)
chr5 (100-299)||(15291691-15291890)
chr5 (99-309)||(433525-433732)
chr5 (98-317)||(35310673-35310889)
chr5 (101-309)||(38446399-38446604)
chr5 (98-309)||(27336926-27337134)
chr5 (110-309)||(3113844-3114038)
chr5 (99-309)||(13166577-13166784)
chr5 (142-296)||(32269508-32269658)
chr5 (100-288)||(6534231-6534416)
chr5 (252-317)||(43129758-43129823)
chr5 (235-294)||(33691856-33691914)
chr5 (206-309)||(34335570-34335679)
chr5 (255-309)||(9841146-9841200)
chr5 (172-217)||(9841084-9841129)
[»] chr6 (12 HSPs)
chr6 (98-313)||(45335-45547)
chr6 (98-309)||(32115922-32116130)
chr6 (98-309)||(4206262-4206470)
chr6 (97-309)||(357382-357591)
chr6 (103-309)||(34304729-34304933)
chr6 (177-290)||(12401583-12401697)
chr6 (100-309)||(29337754-29337957)
chr6 (146-283)||(24016552-24016690)
chr6 (172-307)||(20693336-20693473)
chr6 (189-272)||(7200326-7200410)
chr6 (172-217)||(14538675-14538720)
chr6 (102-154)||(32120314-32120366)
[»] chr2 (18 HSPs)
chr2 (99-309)||(41867575-41867782)
chr2 (98-296)||(20142406-20142601)
chr2 (100-309)||(4412734-4412940)
chr2 (98-309)||(17344871-17345079)
chr2 (98-304)||(9685081-9685284)
chr2 (97-309)||(44686651-44686859)
chr2 (100-299)||(28225243-28225439)
chr2 (176-309)||(27502594-27502728)
chr2 (98-288)||(5532673-5532867)
chr2 (126-299)||(18744648-18744818)
chr2 (235-317)||(19161583-19161665)
chr2 (233-317)||(23484736-23484820)
chr2 (99-167)||(19161492-19161560)
chr2 (237-309)||(13146936-13147008)
chr2 (100-217)||(33612209-33612322)
chr2 (193-317)||(9675069-9675194)
chr2 (233-288)||(3825981-3826036)
chr2 (183-293)||(5679526-5679637)
[»] chr4 (15 HSPs)
chr4 (100-309)||(3330183-3330389)
chr4 (100-309)||(16957769-16957975)
chr4 (98-306)||(53170737-53170939)
chr4 (119-309)||(50000612-50000799)
chr4 (205-299)||(30940508-30940603)
chr4 (100-261)||(34952452-34952610)
chr4 (193-307)||(31847322-31847434)
chr4 (172-299)||(12918109-12918236)
chr4 (102-294)||(25706757-25706944)
chr4 (189-288)||(26521742-26521842)
chr4 (172-309)||(25504526-25504665)
chr4 (117-309)||(132620-132807)
chr4 (98-303)||(56461780-56461975)
chr4 (172-267)||(48506776-48506872)
chr4 (231-288)||(12053665-12053722)
[»] chr8 (11 HSPs)
chr8 (98-294)||(39434915-39435108)
chr8 (98-309)||(24125261-24125469)
chr8 (98-309)||(500460-500668)
chr8 (98-313)||(37517323-37517530)
chr8 (101-287)||(10189798-10189981)
chr8 (226-309)||(35739778-35739861)
chr8 (127-287)||(42921822-42921979)
chr8 (172-287)||(11610984-11611100)
chr8 (232-309)||(25021611-25021688)
chr8 (177-299)||(4700111-4700235)
chr8 (106-171)||(25021478-25021543)
[»] chr3 (13 HSPs)
chr3 (108-309)||(52741187-52741385)
chr3 (100-309)||(53785942-53786147)
chr3 (97-309)||(49018196-49018405)
chr3 (106-309)||(29862030-29862230)
chr3 (97-319)||(52411567-52411786)
chr3 (172-299)||(44199010-44199138)
chr3 (183-309)||(39582976-39583103)
chr3 (198-293)||(7901101-7901197)
chr3 (236-295)||(13582758-13582816)
chr3 (100-154)||(7501806-7501860)
chr3 (172-258)||(35236412-35236499)
chr3 (226-317)||(37992557-37992648)
chr3 (199-299)||(38146303-38146404)
[»] chr1 (11 HSPs)
chr1 (98-306)||(22347113-22347318)
chr1 (98-309)||(34644799-34645007)
chr1 (98-309)||(28040793-28041001)
chr1 (115-298)||(19035691-19035872)
chr1 (126-309)||(29169488-29169668)
chr1 (100-287)||(7794583-7794768)
chr1 (100-288)||(38731834-38732022)
chr1 (228-309)||(45659444-45659521)
chr1 (232-317)||(35387114-35387199)
chr1 (189-317)||(37931971-37932100)
chr1 (241-287)||(37200235-37200281)
[»] chr7 (15 HSPs)
chr7 (98-298)||(24527834-24528031)
chr7 (97-317)||(45613507-45613724)
chr7 (100-299)||(4501501-4501697)
chr7 (102-309)||(19277526-19277729)
chr7 (98-309)||(28516953-28517161)
chr7 (99-294)||(47679373-47679564)
chr7 (189-309)||(3676873-3676994)
chr7 (102-309)||(10905336-10905540)
chr7 (172-301)||(983190-983320)
chr7 (102-304)||(32585385-32585584)
chr7 (241-309)||(43857107-43857174)
chr7 (98-141)||(5827652-5827695)
chr7 (98-171)||(4175580-4175653)
chr7 (100-154)||(43857250-43857303)
chr7 (252-293)||(5825520-5825561)
[»] scaffold0186 (1 HSPs)
scaffold0186 (102-294)||(19969-20158)
[»] scaffold0148 (1 HSPs)
scaffold0148 (229-309)||(33484-33563)
[»] scaffold1768 (1 HSPs)
scaffold1768 (253-317)||(2-66)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 97 - 313
Target Start/End: Original strand, 26212248 - 26212460
Alignment:
Q  97 tcctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttag 196  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||    |||||||||||||||||||||    
T  26212248 tcctgtttgtcgtaaggcgtgcctggatacttttggggagcatgtcgtttattgtaaggagcttctcggctttaa----gtacatacatgattttgttag 26212343  T
Q  197 ggatgtactttttgatatattatgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26212344 ggatgtactttttgatatattcagagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 26212443  T
Q  297 ggcatgcagatgtgatg 313  Q
    |||||||||||||||||    
T  26212444 ggcatgcagatgtgatg 26212460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 100 - 299
Target Start/End: Original strand, 15291691 - 15291890
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    ||||| |||||||||||| |||||||||||||| |||||||  |||||||||||| |||||| |||||    ||||||||| |||||| |||||||||||    
T  15291691 tgtttatcgtaaggcgtgtctggatacttttggggagcatgttgttcattgtaaggagcttcccggct----ttaagtacaaacatgactttgttaggga 15291786  T
Q  200 tgtactttttgatatattatga-gggtgggaatat---cagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactc 295  Q
     |||||||||||||||||  || ||| |||| |||   ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  15291787 cgtactttttgatatattcagatgggcgggagtatcagcagtgaagaaggaagcgcctgtgaacttcccaactgacccactagatagaagatcaacactc 15291886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 309
Target Start/End: Complemental strand, 433732 - 433525
Alignment:
Q  99 ctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggg 198  Q
    ||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||| |  ||||||    |||||  ||||| ||||||||||    
T  433732 ctgtttgtcgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagcttcccaactttaa----gtacaggcatgactttgttaggg 433637  T
Q  199 atgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcag 297  Q
    ||||||| |||||||||||  || ||| ||||||||| |||||||| |||||||| |||||||| ||||||| ||||||| |||||||||| ||||| ||    
T  433636 atgtactatttgatatattcagacgggcgggaatatcggtgaagaaagaggcgcccgtgaactttctgactggcccactaaatagaagatccacacttag 433537  T
Q  298 gcatgcagatgt 309  Q
    |||||| |||||    
T  433536 gcatgcggatgt 433525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 98 - 317
Target Start/End: Complemental strand, 35310889 - 35310673
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||||| |||||||||| ||| |||||||||| ||| |||  |||||||||||| |||||  | |||||||    ||||| |||||| |||||||||    
T  35310889 cctgtttgttgtaaggcgtgtctgaatacttttggggagtatgttgttcattgtaaggagctttccagctttaa----gtacagacatgactttgttagg 35310794  T
Q  198 gatgtactttttgatatattatgagg-gtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||| ||||||||||||||  |  | | | || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  35310793 gatgtcctttttgatatattcgggcgagcgagagtatcagtgaagaaggaggcgcctgtgaacttcctaactgacccactagatagaagatcaacactta 35310694  T
Q  297 ggcatgcagatgtgatgatgt 317  Q
    ||| ||| ||||| |||||||    
T  35310693 ggcttgcggatgttatgatgt 35310673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 101 - 309
Target Start/End: Complemental strand, 38446604 - 38446399
Alignment:
Q  101 gtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggat 200  Q
    ||||||||||||||||  || ||||||||| | |||| |||||||||||||||| |||||| |  ||    |||||||||| ||||| ||||||||||||    
T  38446604 gtttgtcgtaaggcgtatctagatacttttagggagcgtgccgttcattgtaaggagcttcccaact----ttaagtacatgcatgactttgttagggat 38446509  T
Q  201 gtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggc 299  Q
    ||||||||||||||||| | | ||| |||| ||||||||||||||||||||| |||||| || ||||||||||| |||||||||| ||| ||||| ||||    
T  38446508 gtactttttgatatattcaggcgggcgggagtatcagtgaagaaggaggcgcatgtgaattttctgactgaccctctagatagaatatcgacacttaggc 38446409  T
Q  300 atgcagatgt 309  Q
    ||||| ||||    
T  38446408 atgcaaatgt 38446399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 27337134 - 27336926
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||||||||||||| || |||||||||||| | ||||||||||||||||||||| | |||| |||||    |||||||||||| ||| |||||||||    
T  27337134 cctgtttgtcgtaaggcatgtctggatacttttagggagcatgccgttcattgtaaggaacttcccggct----ttaagtacatacttgactttgttagg 27337039  T
Q  198 gatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||  |||||||||||||||| | | | |  ||| ||||||||||||| || || ||||||||||| |||||||||||||||||||||||||| ||||| |    
T  27337038 gacatactttttgatatattcaggcgagcaggagtatcagtgaagaaagaagctcctgtgaactttctgactgacccactagatagaagatcgacactta 27336939  T
Q  297 ggcatgcagatgt 309  Q
    ||| ||| |||||    
T  27336938 ggcctgcggatgt 27336926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 110 - 309
Target Start/End: Original strand, 3113844 - 3114038
Alignment:
Q  110 aaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtacttttt 209  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||| |||||   ||||    ||||||||| |||||| |||||||||||||| ||||||    
T  3113844 aaggcgtacctggatacttttgg-gagcatgcagttcattgtaaggagctttctggct----ttaagtacaaacatgactttgttagggatgtccttttt 3113938  T
Q  210 gatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatg 308  Q
    |||||||| |   ||| |||| ||||||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| || ||||||||||    
T  3113939 gatatattcagctgggcgggagtatcagtgaagaaggaggcccctgtgaacttgccgactg-cccactagatagaagatcaacacttagtcatgcagatg 3114037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 99 - 309
Target Start/End: Original strand, 13166577 - 13166784
Alignment:
Q  99 ctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggg 198  Q
    |||||||| |||||||||| ||||||||||| || ||||||| ||||||||||||| |||||    ||||||| ||    ||  ||||| ||||| ||||    
T  13166577 ctgtttgttgtaaggcgtgtctggatactttcggggagcatgtcgttcattgtaaggagctttgtagctttaaata----caagcatgactttgtaaggg 13166672  T
Q  199 atgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcag 297  Q
    ||||||||||||||||||| | | ||| || | |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |     
T  13166673 atgtactttttgatatattcaggcgggcggaagtatcagtgaagaaggaagcgcctgtgaactttctgactgacccactagatagaagatcgacacttaa 13166772  T
Q  298 gcatgcagatgt 309  Q
    |||||| |||||    
T  13166773 gcatgcggatgt 13166784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 32269508 - 32269658
Alignment:
Q  142 cgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtactttttgatatattatgagg-gtgggaatatcagtgaa 240  Q
    |||||||||||||||| ||| | |||||   ||||||||  ||||| ||||||||||||||| ||||| |||||||  || | | |||| || |||||||    
T  32269508 cgttcattgtaagaagtttcccagcttt---taagtacaatcatgactttgttagggatgtaattttttatatattcagacgagcgggagtagcagtgaa 32269604  T
Q  241 gaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    |||| |||||| |||||  ||||| |||||||||||||||||||||||||||||||    
T  32269605 gaagaaggcgcatgtga--ttcctaactgacccactagatagaagatcaacactca 32269658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 288
Target Start/End: Original strand, 6534231 - 6534416
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    ||||||||||||||| || ||||||||||||   ||||||||  |||||||||||||||||  ||| |||||    ||||| | || | ||||||| |||    
T  6534231 tgtttgtcgtaaggcatgtctggatacttttatggagcatgctattcattgtaagaagctttccggttttaa----gtacacatataactttgttaagga 6534326  T
Q  200 tgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatc 288  Q
    | |||||||||||||||| | | ||| |||| ||||| ||||||| ||| ||| ||||||||| |||| | ||||| |||||||||||||    
T  6534327 tatactttttgatatatttaggtgggcgggagtatcaatgaagaaagagacgcatgtgaactttctgaataacccattagatagaagatc 6534416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 43129823 - 43129758
Alignment:
Q  252 ctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgtgatgatgt 317  Q
    |||||||||| || ||||| | ||||||||||||||| ||||| |||||||||||||| |||||||    
T  43129823 ctgtgaactttcttactgatctactagatagaagatcgacacttaggcatgcagatgttatgatgt 43129758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 294
Target Start/End: Original strand, 33691856 - 33691914
Alignment:
Q  235 agtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacact 294  Q
    ||||||||||||||||| || |||||| ||||||||||| |||||||||||||| |||||    
T  33691856 agtgaagaaggaggcgcttgcgaactttctgactgaccc-ctagatagaagatcgacact 33691914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 34335679 - 34335570
Alignment:
Q  206 ttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaactt-----cctgactgacccactagatagaagatcaacactcaggc 299  Q
    |||||||||||| | | ||| |||| |||||||||||||| |||||| ||| |||||     || |||||||||||||||||||||||| ||||| ||||    
T  34335679 ttttgatatattcaggcgggcgggagtatcagtgaagaagaaggcgcatgtaaacttcttgacccgactgacccactagatagaagatcgacacttaggc 34335580  T
Q  300 atgcagatgt 309  Q
     |||| ||||    
T  34335579 ttgcatatgt 34335570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 309
Target Start/End: Original strand, 9841146 - 9841200
Alignment:
Q  255 tgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    |||||||||||||| ||| ||||||||||||||| ||||| |||| ||| |||||    
T  9841146 tgaacttcctgacttacctactagatagaagatcgacacttaggcctgcggatgt 9841200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 9841084 - 9841129
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtactttttgatatatt 217  Q
    |||||||||||||||| ||||||||  |||| ||||||||||||||    
T  9841084 ttaagtacatacatgactttgttagacatgtcctttttgatatatt 9841129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 98 - 313
Target Start/End: Original strand, 45335 - 45547
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    |||||||||||||||| |||||| ||||||||||| ||||||| |||||  |||||| |||||||||| |||||    |||||||||||| |||||||||    
T  45335 cctgtttgtcgtaaggtgtgccttgatacttttggggagcatgtcgttcggtgtaaggagcttctcgggtttaa----gtacatacatgactttgttagg 45430  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    |||||||||||||||||||| ||| ||| |||||||||||| |||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||    
T  45431 gatgtactttttgatatattctgacgggcgggaatatcagttaagaaggaggcgtctttgaactttctgactgacccactagatagaagatcaacactca 45530  T
Q  297 ggcatgcagatgtgatg 313  Q
    ||| |||||||||||||    
T  45531 ggcctgcagatgtgatg 45547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 32116130 - 32115922
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    |||||||||||||||| |||||||||||||||||| ||||||| || ||||||| || |||||| |  ||    |||||||||||||||| |||||||||    
T  32116130 cctgtttgtcgtaaggtgtgcctggatacttttggggagcatgtcgctcattgtgaggagcttcccaact----ttaagtacatacatgactttgttagg 32116035  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    |||||||||||||||||||| ||| ||| |||| ||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  32116034 gatgtactttttgatatattttgacgggcgggagtatcagtgaagaaagaggcgcatgtgaacttcctgactgacctactagatagaagatcaacactca 32115935  T
Q  297 ggcatgcagatgt 309  Q
    ||| ||| |||||    
T  32115934 ggcctgcggatgt 32115922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 309
Target Start/End: Original strand, 4206262 - 4206470
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| || |||   |||||||    |||||||||||| |||||||||    
T  4206262 cctgtttgtcgtaaggcgtgcctggatacttttggggagcatgccgttcactgtaaggagtttccgagctttaa----gtacatacatgactttgttagg 4206357  T
Q  198 gatgtactttttgatatattatgagg-gtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||||||||||||||||||  || | |||||||||||||||||||||||||| || ||||||||| ||| |||||||||||||| ||||||||||||||    
T  4206358 gatgtactttttgatatattcagacgtgtgggaatatcagtgaagaaggaggcacccgtgaacttcttgattgacccactagataaaagatcaacactca 4206457  T
Q  297 ggcatgcagatgt 309  Q
     || ||| |||||    
T  4206458 agcctgcggatgt 4206470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 309
Target Start/End: Original strand, 357382 - 357591
Alignment:
Q  97 tcctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttag 196  Q
    |||| |||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| || || || | |||||   ||||||| ||||  ||||||||    
T  357382 tcctttttgacgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagatt-tctggtttaa---agtacatgcatgcctttgttag 357477  T
Q  197 ggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactc 295  Q
    ||||||||||||||||||||| | | ||| |||| ||||||||||||||||||| | |||||||||  |||||||| |||||||||||||||| |||||     
T  357478 ggatgtactttttgatatattcaggcgggcgggagtatcagtgaagaaggaggcccttgtgaactttttgactgacacactagatagaagatcgacactt 357577  T
Q  296 aggcatgcagatgt 309  Q
    ||| ||||||||||    
T  357578 aggtatgcagatgt 357591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 103 - 309
Target Start/End: Complemental strand, 34304933 - 34304729
Alignment:
Q  103 ttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgt 202  Q
    |||||||||| | || |||||||||||||| |||||||  ||||| |||||| ||||||||||||||||    |||||| ||||| ||||||||||||||    
T  34304933 ttgtcgtaagacatgtctggatacttttggggagcatgttgttcactgtaaggagcttctcggctttaa----gtacatgcatgactttgttagggatgt 34304838  T
Q  203 actttttg-atatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggca 300  Q
    |||||||  ||||||| | |  ||  ||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| ||||| ||||     
T  34304837 actttttttatatattcaggcaggcaggagtatcagtgaagaaggagacgcatgtgaactttctgactgacccactagatagaagatcgacacttaggcc 34304738  T
Q  301 tgcagatgt 309  Q
    ||| |||||    
T  34304737 tgcggatgt 34304729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 12401697 - 12401583
Alignment:
Q  177 tacatacatgattttgttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccac 275  Q
    |||| |||||| ||||||||  ||||||||||||||||||| | | ||| | || ||| |||||||||||||||||||||||||||||||||||||| ||    
T  12401697 tacaaacatgactttgttagaaatgtactttttgatatattcaggcgggcgagagtattagtgaagaaggaggcgcctgtgaacttcctgactgacctac 12401598  T
Q  276 tagatagaagatcaa 290  Q
    ||||||| |||||||    
T  12401597 tagatagcagatcaa 12401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 309
Target Start/End: Original strand, 29337754 - 29337957
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    ||||| ||||||||| ||||||||||||| ||| |||||||  |||||||||||| ||||||   |||    ||||||||| |||| | |||||||||||    
T  29337754 tgtttctcgtaaggcatgcctggatacttgtggggagcatgtagttcattgtaagtagcttcctagct----ttaagtacacacataactttgttaggga 29337849  T
Q  200 tgtactttttgatatattatgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggc 299  Q
    ||   ||| |||||||||| | | | ||||||||||| ||||||||||| || | ||||||||  || |||||||||||||||||| || ||||| ||||    
T  29337850 tgccatttatgatatattaag-gcgcgggaatatcagcgaagaaggagg-gcttttgaacttctggattgacccactagatagaagttcgacacttaggc 29337947  T
Q  300 atgcagatgt 309  Q
     |||||||||    
T  29337948 ctgcagatgt 29337957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 283
Target Start/End: Complemental strand, 24016690 - 24016552
Alignment:
Q  146 cattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaag 244  Q
    |||||||||||||||    |||||||||||||| | | |||| ||||||| ||||||  ||||| ||||||| | | ||| | || |||| |||| ||||    
T  24016690 cattgtaagaagcttactagctttaattaagtagagatatgactttgttaaggatgtcattttttatatattcaggtgggcgagagtatcggtgaggaag 24016591  T
Q  245 gaggcgcctgtgaacttcctgactgacccactagataga 283  Q
    ||| ||||||||||||||||||||||| |||| ||||||    
T  24016590 gagacgcctgtgaacttcctgactgacacacttgataga 24016552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 20693336 - 20693473
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtactttttgatata--ttatgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactg 269  Q
    ||||||||| |||||| ||| |||||| |||  |||||||||||  ||| | | |||||| |||| || ||||||||| | | |||||||||  ||| ||    
T  20693336 ttaagtacaaacatgactttattagggttgtcatttttgatatattttaggcgagtgggagtatcggtaaagaaggagactcttgtgaactttttgattg 20693435  T
Q  270 acccactagatagaagatcaacactcaggcatgcagat 307  Q
    ||| |||||||| |||||| ||||| |||| |||||||    
T  20693436 accaactagataaaagatccacacttaggcctgcagat 20693473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 7200326 - 7200410
Alignment:
Q  189 tttgttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacc 272  Q
    |||||||||||||| |||||||||||||| |||  ||   || |||  ||||||||||||||||||||||||||| || ||||||    
T  7200326 tttgttagggatgtcctttttgatatattcatgttggcatgagtatttgtgaagaaggaggcgcctgtgaacttcttgtctgacc 7200410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 14538675 - 14538720
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtactttttgatatatt 217  Q
    |||||||||||||| | |||||||| ||||| ||||||||||||||    
T  14538675 ttaagtacatacataactttgttagagatgtcctttttgatatatt 14538720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 32120366 - 32120314
Alignment:
Q  102 tttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaag 154  Q
    |||||||||||| ||| |||||||||||||| |||||| || |||||| ||||    
T  32120366 tttgtcgtaaggtgtgtctggatacttttggggagcattcctttcattataag 32120314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 99 - 309
Target Start/End: Original strand, 41867575 - 41867782
Alignment:
Q  99 ctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggg 198  Q
    |||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||| |||||| |||||||||    ||||| || ||| ||||||||||    
T  41867575 ctgtttgtcgtaagtcgtgtctggatacttttggggagcatgccattcattgtaaggagcttcccggctttaa----gtacagacgtgactttgttaggg 41867670  T
Q  199 atgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcag 297  Q
    |||| |||||||||||||| ||  ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41867671 atgttctttttgatatattcatacgggcgggaatatcagtgaagaaggaggcacctgtgaacttcctgactgacccactagatagaagatcaacactcag 41867770  T
Q  298 gcatgcagatgt 309  Q
    || ||| |||||    
T  41867771 gcctgcggatgt 41867782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 98 - 296
Target Start/End: Original strand, 20142406 - 20142601
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||  ||||||||    ||||| |||||| |||||||||    
T  20142406 cctgtttgtcgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagcttccaggctttaa----gtacagacatgactttgttagg 20142501  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||||||||||||||||||  || ||| ||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||    
T  20142502 gatgtactttttgatatattcagacgggcgggaatatcagtgaagaaggaggcgtctatgaacttcctgactgacccagtagatagaagatcaacactca 20142601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 100 - 309
Target Start/End: Original strand, 4412734 - 4412940
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    |||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||  |||||||||    || || |||||| |||||||||||    
T  4412734 tgttggtcgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaaggagctttccggctttaa----gtgcagacatgactttgttaggga 4412829  T
Q  200 tgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcagg 298  Q
    ||||||||||||||||||   | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4412830 tgtactttttgatatattcaaacgggcgggaatatcagtgaagaaggaggcacctgtgaacttcctgactgacccactagatagaagatcaacactcagg 4412929  T
Q  299 catgcagatgt 309  Q
    | ||| |||||    
T  4412930 cctgcggatgt 4412940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 17345079 - 17344871
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||  ||||    ||||||||| ||| || |||||||||    
T  17345079 cctgtttgtcgtaaggcgtgcctggatacttttggggagcatgtcgttcattgtaaggaacttcctggct----ttaagtacagacacgactttgttagg 17344984  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||||||||||||||||||  || |||  ||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  17344983 gatgtactttttgatatattcagacgggcaggagtatcagtgaagaaggaggcgcctgtgaactttctgactgacccgctagaaagaagatcaacactca 17344884  T
Q  297 ggcatgcagatgt 309  Q
    ||||||| |||||    
T  17344883 ggcatgcggatgt 17344871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 304
Target Start/End: Original strand, 9685081 - 9685284
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    |||||||||||||||||||| |||||||||||||| ||||  | ||||||||||||| |||||| |||||||||    ||||| |||||| |||||||||    
T  9685081 cctgtttgtcgtaaggcgtgtctggatacttttggggagcgcgtcgttcattgtaaggagcttcccggctttaa----gtacagacatgactttgttagg 9685176  T
Q  198 gatgtactttttgatatattatgagggtgggaa-tatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||||||||| ||||||||  || ||  |||| ||| |||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||    
T  9685177 gatgtacttttcgatatattcagacgggcggaagtattagtgaagaaggaggcttctgtgaacttcctgactgacccactagatagaaggtcaacactca 9685276  T
Q  297 ggcatgca 304  Q
    ||| ||||    
T  9685277 ggcctgca 9685284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 97 - 309
Target Start/End: Complemental strand, 44686859 - 44686651
Alignment:
Q  97 tcctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttag 196  Q
    ||||||||||||||||  ||| |||||||||||||| ||||||| | ||||||||||| |||||| |||||||||    |||||| ||| ||||||||||    
T  44686859 tcctgtttgtcgtaagatgtgtctggatacttttgg-gagcatgtcattcattgtaaggagcttcccggctttaa----gtacatgcatcattttgttag 44686765  T
Q  197 ggatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactc 295  Q
      |||||||||||||||||||  || ||| |||| |||||||||||||||||| ||||||||||||  ||||||| | ||||||||||||||  |||||     
T  44686764 atatgtactttttgatatattcagacgggcgggagtatcagtgaagaaggaggggcctgtgaactttgtgactgatctactagatagaagattgacactt 44686665  T
Q  296 aggcatgcagatgt 309  Q
    |||| ||| |||||    
T  44686664 aggcctgcggatgt 44686651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 28225439 - 28225243
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    ||||||||||||| |||| || ||||||||||| ||||||||||||||||||||| || ||  |||||    |||||||||  ||||| |||||||||||    
T  28225439 tgtttgtcgtaagacgtgtctagatacttttggggagcatgccgttcattgtaaggagttttccggct----ttaagtacaggcatgactttgttaggga 28225344  T
Q  200 tgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcagg 298  Q
    |||||||||||||||||| | | ||  |||| |||| ||||||| ||||| |||||||||||| |||||| ||||||||||||||| ||| ||||| |||    
T  28225343 tgtactttttgatatattcaggtggtcgggagtatcggtgaagagggaggtgcctgtgaactttctgacttacccactagatagaatatcgacacttagg 28225244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 27502728 - 27502594
Alignment:
Q  176 gtacatacatgattttgttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgaccca 274  Q
    ||||| ||||||||||||||| |||||||||||||||||||| | | | | |||| ||||| ||||||||||||||||||||||||| ||||||||||||    
T  27502728 gtacagacatgattttgttagagatgtactttttgatatattcaagtgagcgggagtatcactgaagaaggaggcgcctgtgaactttctgactgaccca 27502629  T
Q  275 ctagatagaagatcaacactcaggcatgcagatgt 309  Q
    ||||||  |||||| ||||| |||| ||| |||||    
T  27502628 ctagatgcaagatcgacacttaggcctgcggatgt 27502594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 98 - 288
Target Start/End: Complemental strand, 5532867 - 5532673
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||||| ||||| |||||||| |||||||||| |||||||| |||||||||||| ||||||  ||||    ||||||||| |||| | ||||||||     
T  5532867 cctgtttgttgtaagacgtgcctgaatacttttggggagcatgcagttcattgtaaggagcttcatggct----ttaagtacaaacataaatttgttaga 5532772  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaact-------tcctgactgacccactagatagaagatc 288  Q
    |||||  ||||| |||||||  || | | |||| ||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||    
T  5532771 gatgtcatttttaatatattcagacgagcgggagtatcagtgaagaaggaggcccctgtgaacttccttagtcctgactgacccactagatagaagatc 5532673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 126 - 299
Target Start/End: Original strand, 18744648 - 18744818
Alignment:
Q  126 cttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtactttttgatatattatga-ggg 224  Q
    ||||||| ||||||| ||||||||||||| | ||||  | ||||||    ||||||||| || |||||||||||| ||||||||||||||||  || |||    
T  18744648 cttttggggagcatgtcgttcattgtaaggaacttcctgcctttaa----gtacatacacgactttgttagggatatactttttgatatattcagacggg 18744743  T
Q  225 tgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggc 299  Q
      ||| ||||||| |||||| ||| ||||||||| |||||||||||||| ||||| |||| ||||||||||||||    
T  18744744 caggagtatcagtaaagaagaaggtgcctgtgaatttcctgactgacccgctagaaagaatatcaacactcaggc 18744818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 19161583 - 19161665
Alignment:
Q  235 agtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgtgatgatgt 317  Q
    |||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  19161583 agtgaagaaggaggcgtctgtgaacgtcctaactgacccattagatagaagatcaacactcaggcatgcggatgttatgatgt 19161665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 23484736 - 23484820
Alignment:
Q  233 tcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgtgatgatgt 317  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||| |||||||||||||||||| ||||||| |||| |||||||    
T  23484736 tcagtgaagaaggaggcgtctgtgaacttcctgattgacctactatatagaagatcaacactcaagcatgcatatgttatgatgt 23484820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 19161492 - 19161560
Alignment:
Q  99 ctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggct 167  Q
    ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||| |||||    
T  19161492 ctgtttgtcgtaaggcgcgcctggatacttttggggagcatgtcgttcattgtaaggagcttcccggct 19161560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 13146936 - 13147008
Alignment:
Q  237 tgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    ||||||| |||||| ||||||||||||||| | ||||||||||||||||||| ||| | ||||||| ||||||    
T  13146936 tgaagaatgaggcgtctgtgaacttcctgattaacccactagatagaagatcgacatttaggcatgtagatgt 13147008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 33612209 - 33612322
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    |||||||||||| | ||| |||||||||||||| |||||| |   |||||||||| |||||| | | |||   ||||||||||||||| ||||| |||||    
T  33612209 tgtttgtcgtaaagtgtgtctggatacttttggggagcatacaactcattgtaaggagcttc-cagattt---taagtacatacatgactttgtcaggga 33612304  T
Q  200 tgtactttttgatatatt 217  Q
    ||| ||||||||||||||    
T  33612305 tgttctttttgatatatt 33612322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 317
Target Start/End: Complemental strand, 9675194 - 9675069
Alignment:
Q  193 ttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaac 291  Q
    ||||||||| ||||||| ||||||| | |  || |||| || || ||||||| ||||||||||||||||| ||||| |||| | || ||| |||||| ||    
T  9675194 ttagggatgcacttttttatatatttaggcaggagggagtagcaatgaagaatgaggcgcctgtgaactttctgaccgaccgattaaataaaagatcgac 9675095  T
Q  292 actcaggcatgcagatgtgatgatgt 317  Q
    ||| || ||||||||||| |||||||    
T  9675094 acttagacatgcagatgttatgatgt 9675069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 3826036 - 3825981
Alignment:
Q  233 tcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatc 288  Q
    ||||| ||||| |||||  |||||||||| ||||||||||||||||||||||||||    
T  3826036 tcagttaagaaagaggcatctgtgaactttctgactgacccactagatagaagatc 3825981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 293
Target Start/End: Complemental strand, 5679637 - 5679526
Alignment:
Q  183 catgattttgttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagata 281  Q
    ||||| |||||||||||||| |||||||||||||| | |     | |||||||||||||||||||  ||| |||||||||| ||| |||||||| |||      
T  5679637 catgactttgttagggatgttctttttgatatatttaggcataagtgaatatcagtgaagaaggaatcgcatgtgaacttcttgattgacccacgagaag 5679538  T
Q  282 gaagatcaacac 293  Q
    ||||| ||||||    
T  5679537 gaagaccaacac 5679526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 3330389 - 3330183
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    |||||||||||||||||| ||| |||||||||| ||||||||| ||||||||||| |||||| |||||||||    |||||  ||||| |||||||||||    
T  3330389 tgtttgtcgtaaggcgtgtctgtatacttttggggagcatgccattcattgtaaggagcttcccggctttaa----gtacaggcatgactttgttaggga 3330294  T
Q  200 tgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcagg 298  Q
    |||||||||||||||||| | | | | |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||    
T  3330293 tgtactttttgatatattcaggcgagcgggagtatcagtgaagaaggaggcacctgtgaactttctgactgacccactagatagaagatcaacacttagg 3330194  T
Q  299 catgcagatgt 309  Q
    |||||||||||    
T  3330193 catgcagatgt 3330183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 16957975 - 16957769
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    ||||||||||||||||||||| ||||||||||| ||||||  ||||||||||||| ||||||  | ||    |||||||||||||||| ||| |||||||    
T  16957975 tgtttgtcgtaaggcgtgcctagatacttttggggagcatatcgttcattgtaaggagcttcctgact----ttaagtacatacatgacttttttaggga 16957880  T
Q  200 tgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcagg 298  Q
    ||||||||||||||||||  || |||  ||| ||||||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||    
T  16957879 tgtactttttgatatattcagacgggcaggagtatcagtgaggtaggaggcgcctgtgaacttcctgactgacccgctagataaaagatcaacacttagg 16957780  T
Q  299 catgcagatgt 309  Q
    | |||||||||    
T  16957779 cctgcagatgt 16957769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 53170939 - 53170737
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    |||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||| | ||| |||    ||||| |||||| ||||| |||    
T  53170939 cctgtttgtcgtaaggcgtgcctgaatacttttggggagcatgtcgttcattgtaaggagcttccccgctctaa----gtacagacatgactttgt-agg 53170845  T
Q  198 gatgtactttttgatatattatgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcag 297  Q
    ||||||||||||||||| | |   |||  ||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| ||    
T  53170844 gatgtactttttgatat-tcagacgggcaggaatatcagtgaagaaagaggcgtctgtgaacttcctgactgacctactagatagaagatcaacacttag 53170746  T
Q  298 gcatgcaga 306  Q
    |||||||||    
T  53170745 gcatgcaga 53170737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 119 - 309
Target Start/End: Original strand, 50000612 - 50000799
Alignment:
Q  119 ctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtactttttgatatatt- 217  Q
    ||||||||||||||  |||||||||||||||||||| |||||| || |||||| ||    || |||||| ||||||| |||||||||||||||||||||     
T  50000612 ctggatacttttgggaagcatgccgttcattgtaaggagcttcccgactttaaata----cagacatgactttgttaaggatgtactttttgatatattc 50000707  T
Q  218 atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    | | | |  ||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  50000708 aggcgagcaggagtatcaatgaagaaggaggcgcctgtgaactttctgactgacccactagatagaagatcgacacttaggcctgcggatgt 50000799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 30940508 - 30940603
Alignment:
Q  205 tttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggc 299  Q
    |||||||||||||  || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30940508 tttttgatatattcagacgggcgggaatatcagtgaagaaggaggcacctgtgaacttcctgactgacccactagatagaagatcaacactaaggc 30940603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 261
Target Start/End: Complemental strand, 34952610 - 34952452
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    ||||||||||||| |||| ||| |||||||||| |||||||||||| | |||||| ||||||||  ||    |||||||||||||||| |||||||||||    
T  34952610 tgtttgtcgtaagacgtgtctgaatacttttggggagcatgccgtttaatgtaaggagcttctctact----ttaagtacatacatgactttgttaggga 34952515  T
Q  200 tgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaactt 261  Q
    |||  ||||||||||||| | | ||| | || ||||||||||||||||||||| |||||||||    
T  34952514 tgtcatttttgatatattaaggcgggcgagagtatcagtgaagaaggaggcgcatgtgaactt 34952452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 307
Target Start/End: Complemental strand, 31847434 - 31847322
Alignment:
Q  193 ttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaac 291  Q
    ||||||| ||||||||||||||||| | | | |||||| |||||||||||   ||||||||||||||||| ||||||||||||||||||| |||||  ||    
T  31847434 ttagggacgtactttttgatatattcaggcgagtgggagtatcagtgaag---gaggcgcctgtgaactttctgactgacccactagataaaagattgac 31847338  T
Q  292 actcaggcatgcagat 307  Q
    ||| |||| |||||||    
T  31847337 acttaggcctgcagat 31847322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 299
Target Start/End: Original strand, 12918109 - 12918236
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactga 270  Q
    ||||||||||  |||| ||||||||||||||||||||||||||||| | | ||| ||||  || |||||| ||||| |  ||||||||||| || |||||    
T  12918109 ttaagtacatgtatgactttgttagggatgtactttttgatatattcaggcgggcgggagcattagtgaa-aaggatggacctgtgaactttctaactga 12918207  T
Q  271 cccactagatagaagatcaacactcaggc 299  Q
    |||||||||||||||||| ||||| ||||    
T  12918208 cccactagatagaagatcgacacttaggc 12918236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 25706944 - 25706757
Alignment:
Q  102 tttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatg 201  Q
    |||||||||||| |||| ||||||||||||| |||| |   |||||| ||||| ||||| ||| ||||||    |||||| ||||| ||||||||||||     
T  25706944 tttgtcgtaaggtgtgcatggatacttttggggagc-tattgttcatcgtaaggagcttatcgactttaa----gtacatgcatgactttgttagggatt 25706850  T
Q  202 tactttttgatatattatgagggtgggaa-tatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacact 294  Q
    |  ||||| ||| |||  |  |||  ||| ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  25706849 tttttttt-atacattcaggcggtcagaagtataagtgaagaaggaggcgcatgtgaactttctgactgacccactagatagaagatcgacact 25706757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 26521842 - 26521742
Alignment:
Q  189 tttgttagggatgtactttttgatatattatgagggtgg-gaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagat 287  Q
    |||||||||||||||||||||||||||||  || ||  | || ||||| ||||||| ||||||| ||||| ||| |||||||||||||||||||||||||    
T  26521842 tttgttagggatgtactttttgatatatttagacggacgagagtatcattgaagaatgaggcgcatgtgagctttctgactgacccactagatagaagat 26521743  T
Q  288 c 288  Q
    |    
T  26521742 c 26521742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 25504665 - 25504526
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtacttttt-gatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactg 269  Q
    ||||||||| |||||| |||||||| |||||||||||| ||||||||   | ||| | ||  |||||||||||| ||||| | |||||||||| |||  |    
T  25504665 ttaagtacaaacatgactttgttagagatgtacttttttgatatattcaaacgggcgagagcatcagtgaagaacgaggcacatgtgaacttcttgatag 25504566  T
Q  270 acccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    |||||||||||||||| | ||||||||| ||||| |||||    
T  25504565 acccactagatagaagtttaacactcagacatgcggatgt 25504526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 309
Target Start/End: Complemental strand, 132807 - 132620
Alignment:
Q  117 gcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtactttttgatatat 216  Q
    |||||||||  ||||| ||||||| ||||||||||||| |||||  ||| |||||    ||| |  ||||| |||||||||||||||||||| |||||||    
T  132807 gcctggatatctttggagagcatgtcgttcattgtaaggagctttccggttttaa----gtataatcatgactttgttagggatgtactttt-gatatat 132713  T
Q  217 t-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    | | | |||  ||| ||| |||||| || ||  ||| |||||||||| ||||||  ||||||||||||||||| |||||  |||||||||||||    
T  132712 tcaggcgggcaggagtattagtgaaaaaagat-cgcatgtgaacttcttgactggtccactagatagaagatcgacacttcggcatgcagatgt 132620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 303
Target Start/End: Original strand, 56461780 - 56461975
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||| |||||||| ||||||||||| |||||| ||||||| |||||| |||||| ||||||  || |    ||||||| |    ||| |||||||||    
T  56461780 cctgtttttcgtaaggtgtgcctggata-ttttggggagcatgtcgttcactgtaaggagcttcctggtt----ttaagtataggtgtgactttgttagg 56461874  T
Q  198 gatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    |||||||||||||||||||| | | | |  ||| |||||||||| ||||||      ||||| |||||| |||| ||||||||||||||||| ||||| |    
T  56461875 gatgtactttttgatatattcaggcgtgcaggagtatcagtgaataaggag------gtgaaattcctggctgatccactagatagaagatcgacactta 56461968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 48506776 - 48506872
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgac 267  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||| |  || ||  | || |||| || ||||||||||||||||||||||| |||||    
T  48506776 ttaagtacatacatgactttgttacggatgtattttttgatatactcagacggacgagagtatcggtaaagaaggaggcgcctgtgaacttactgac 48506872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 12053722 - 12053665
Alignment:
Q  231 tatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatc 288  Q
    ||||||||||||||  | ||| ||| |||||||||||||| |||||||||||||||||    
T  12053722 tatcagtgaagaagtggacgcttgtaaacttcctgactgatccactagatagaagatc 12053665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 98 - 294
Target Start/End: Complemental strand, 39435108 - 39434915
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||  | |||| |||||||||    |||||  ||||| |||||||||    
T  39435108 cctgtttgtcgtaaggcgtgtctggatacttttggggagcatgccgttcattgtaaagaacttcccggctttaa----gtacaggcatgactttgttagg 39435013  T
Q  198 gatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacact 294  Q
    |||||||||||||||||||| | | | | |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  39435012 gatgtactttttgatatattcaggcgagcgggagtatcagtgaagaaggaggcgcctgtgaactttctgactgacccactagatagaagatcgacact 39434915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 24125469 - 24125261
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| |||||| || ||    ||||||||| |||||| |||||||||    
T  24125469 cctgtttgtcgtaaggcgtgtctggatacttttggggagcatgccgttcattttaaggagcttcccgact----ttaagtacaaacatgactttgttagg 24125374  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||||||||||||||||||  || |||  |||  || ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  24125373 gatgtactttttgatatatttagacgggcaggagcattagtgaagtaggaggcgtctgtcaacttcctgactgacccactagatagaagatcaacactca 24125274  T
Q  297 ggcatgcagatgt 309  Q
    ||| |||| ||||    
T  24125273 ggcctgcatatgt 24125261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 500668 - 500460
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||||| ||||||| ||||| ||||||||||| ||||||| ||||||||||||| ||| || || ||    |||||||||| |||||||||||||||    
T  500668 cctgtttgttgtaaggcatgcctagatacttttggggagcatgtcgttcattgtaaggagcatcccgact----ttaagtacatgcatgattttgttagg 500573  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||||||||||||||||||  ||   | | || |||||||||||||||| |||  |||||||||||||| | |||||||||||||||||||||||||||    
T  500572 gatgtactttttgatatattcagacatgcgagagtatcagtgaagaaggaagcgtatgtgaacttcctgatttacccactagatagaagatcaacactca 500473  T
Q  297 ggcatgcagatgt 309  Q
    ||| ||| |||||    
T  500472 ggcctgcggatgt 500460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 313
Target Start/End: Complemental strand, 37517530 - 37517323
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||| ||||||| ||||  ||||| ||| ||| ||||||||||||||||||||| |||||| || ||||||    ||||| |||||| |||||||||    
T  37517530 cctgtttatcgtaagacgtgtgtggattcttctggggagcatgccgttcattgtaaggagcttcccgactttaa----gtacagacatgactttgttagg 37517435  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||||||||||||||||||  ||  || || |||||||| |||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  37517434 gatgtactttttgatatattcagacaggcggaaatatcagcgaagaaggaggcgcctgtgaacttcct-----acccactagatagaagatcaacactca 37517340  T
Q  297 ggcatgcagatgtgatg 313  Q
     || |||| ||||||||    
T  37517339 tgcctgcaaatgtgatg 37517323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 101 - 287
Target Start/End: Complemental strand, 10189981 - 10189798
Alignment:
Q  101 gtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggat 200  Q
    ||||| ||||||| ||||||||||||||||   |||||||| |||||||||||| |||||| |||||    ||||||||| |||||| ||||||| | ||    
T  10189981 gtttgccgtaaggtgtgcctggatacttttaaggagcatgcagttcattgtaaggagcttcacggct----ttaagtacaaacatgactttgttaagaat 10189886  T
Q  201 gtactttttgatatat-tatgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagat 287  Q
    ||  ||||||||||||  | | ||||| || |||||||||||||||| | || ||||| ||| || |||||| |||||||||||||||    
T  10189885 gtcatttttgatatatccaagcgggtgagagtatcagtgaagaaggatgggcatgtgatctttctaactgactcactagatagaagat 10189798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 35739778 - 35739861
Alignment:
Q  226 gggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    |||| |||||||||||||||||| |||||||||||| |||||||||||| | | ||||||||||||||| ||||||||||||||    
T  35739778 gggagtatcagtgaagaaggaggtgcctgtgaactttctgactgacccatttggtagaagatcaacacttaggcatgcagatgt 35739861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 287
Target Start/End: Original strand, 42921822 - 42921979
Alignment:
Q  127 ttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtactttttgatatatt-atgagggt 225  Q
    |||||| |||||||  ||||||||||||||| |||| ||||||||    |||||||||||| || ||||||||||| |||||||||||||| | | |||     
T  42921822 ttttggagagcatgtagttcattgtaagaagtttcttggctttaa----gtacatacatgacttcgttagggatgttctttttgatatattcaggcggga 42921917  T
Q  226 gggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagat 287  Q
    || | |||| |||||||||||| | ||| |||||||| ||||| || ||||| |||||||||    
T  42921918 ggaagtatcggtgaagaaggagacccctatgaacttcttgacttactcactatatagaagat 42921979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 11610984 - 11611100
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactga 270  Q
    |||||||||| ||||| ||||||| |||||| |||||||||||||| | | ||||| || ||| |||||||||||||||  |  |||| || ||||||||    
T  11610984 ttaagtacattcatgactttgttacggatgtcctttttgatatattcaggcgggtgagagtattagtgaagaaggaggcctcaatgaatttgctgactga 11611083  T
Q  271 cccactagatagaagat 287  Q
    |||||||||||||||||    
T  11611084 cccactagatagaagat 11611100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 25021611 - 25021688
Alignment:
Q  232 atcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    ||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||  |||| |||| |||||||||    
T  25021611 atcagtgaagaaggaagcgcatgtgaacttcttgtctgacccactagatagaagatcgtcacttaggcctgcagatgt 25021688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 299
Target Start/End: Complemental strand, 4700235 - 4700111
Alignment:
Q  177 tacatacatgattttgttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccac 275  Q
    ||||| ||||| ||| |||||||||| |||||| ||||||| | ||||  |||| |||| |||||||||||| |||||||||||||| |  |||||||||    
T  4700235 tacatgcatgactttcttagggatgtccttttttatatattcaagaggcgggga-tatctgtgaagaaggagccgcctgtgaacttcttctctgacccac 4700137  T
Q  276 taga--tagaagatcaacactcaggc 299  Q
    ||||  | ||||||||||||| ||||    
T  4700136 tagatttggaagatcaacacttaggc 4700111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 25021478 - 25021543
Alignment:
Q  106 tcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaa 171  Q
    ||||||||||||||| |||||||||||  ||||||  |||||||||||| ||||||| || |||||    
T  25021478 tcgtaaggcgtgccttgatacttttgggaagcatgtagttcattgtaaggagcttcttggatttaa 25021543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 108 - 309
Target Start/End: Original strand, 52741187 - 52741385
Alignment:
Q  108 gtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtacttt 207  Q
    ||||||||| | ||||||||||||| ||| ||| ||||||||||||| |||||| || ||||||    ||||| |||||| ||||||||||||||| |||    
T  52741187 gtaaggcgttcttggatacttttggggagtatgtcgttcattgtaaggagcttcccgactttaa----gtacagacatgactttgttagggatgtaattt 52741282  T
Q  208 ttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcaga 306  Q
    ||||||||||  || ||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  52741283 ttgatatattcagacgggcgggaatatcagtgaagaaggaggcgtatgtgaacttcctgactgacccactagatagaagatcaacactcagacttgcaga 52741382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 53786147 - 53785942
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||    ||||| ||| || |||||||||||    
T  53786147 tgtttgtcgtaaggcgtgcctggatacttttggggagcatgtcgttcattgtaaggagcttc-cggctttaa----gtacagacacgactttgttaggga 53786053  T
Q  200 tgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcagg 298  Q
    ||||||||||||||||||  || |||  ||| |||||||||||||||| |||| |||||||||||| |||||||| ||||| | ||||||||||||||||    
T  53786052 tgtactttttgatatattcagacgggcaggagtatcagtgaagaaggaagcgcatgtgaacttcctaactgacccgctagaaataagatcaacactcagg 53785953  T
Q  299 catgcagatgt 309  Q
    ||||| |||||    
T  53785952 catgcggatgt 53785942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 97 - 309
Target Start/End: Complemental strand, 49018405 - 49018196
Alignment:
Q  97 tcctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttag 196  Q
    |||||||||||||||| |||||||  |||||||| | ||||||| ||||||||||||||| |||| | | |||   ||||||||||||||| ||||||||    
T  49018405 tcctgtttgtcgtaagacgtgcctatatactttttgggagcatgtcgttcattgtaagaaacttc-ctgattt---taagtacatacatgactttgttag 49018310  T
Q  197 ggatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactc 295  Q
    |||||| ||||||||||||||  || |||  ||| |||| ||||||||  ||| | | |||||||||||||||||||||||||||||||||| |||||||    
T  49018309 ggatgtgctttttgatatattcagacgggcaggagtatcggtgaagaataaggtgtcagtgaacttcctgactgacccactagatagaagattaacactc 49018210  T
Q  296 aggcatgcagatgt 309  Q
    ||||||||||||||    
T  49018209 aggcatgcagatgt 49018196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 106 - 309
Target Start/End: Complemental strand, 29862230 - 29862030
Alignment:
Q  106 tcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtact 205  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||  | |||||    |||||  ||||| |||||||||||||||||    
T  29862230 tcgtaaggcgtgcctagatacttttggggagcatgtcgttcattgtaaggagcttctgagttttaa----gtacaggcatgactttgttagggatgtact 29862135  T
Q  206 ttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgca 304  Q
    |||||||||||| | |  || |||| ||| ||||||||| ||||| | |||||||||| || ||| |||||||||||||||||| ||||| |||||||||    
T  29862134 ttttgatatattcaggcaggcgggagtattagtgaagaaagaggcacatgtgaacttcttgtctggcccactagatagaagatcgacacttaggcatgca 29862035  T
Q  305 gatgt 309  Q
    |||||    
T  29862034 gatgt 29862030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 97 - 319
Target Start/End: Original strand, 52411567 - 52411786
Alignment:
Q  97 tcctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttag 196  Q
    ||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||||| |||    |||||||   |||||| ||| ||||    
T  52411567 tcctgtttgtcgtaaggcgtgcctgaatacttttggggagcatgtcgttcattgtaaggagcttctcagct----ttaagtattgacatgactttattag 52411662  T
Q  197 ggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactc 295  Q
    |||||| |||||| ||||||| | | ||    || ||||||||||||||||| ||  |||||||||  | ||||||||||||||||||||||  || ||     
T  52411663 ggatgtcctttttaatatattcaagcggacaagagtatcagtgaagaaggagacgtttgtgaactttttaactgacccactagatagaagattgacgctt 52411762  T
Q  296 aggcatgcagatgtgatgatgtcc 319  Q
    |||| ||||||||| |||||||||    
T  52411763 aggcctgcagatgttatgatgtcc 52411786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 172 - 299
Target Start/End: Complemental strand, 44199138 - 44199010
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactga 270  Q
    ||||||||| |||||| |||||||  |||||| ||||| |||||||  || |||  || |||||| |||||||||||| ||||||||||||| |||||||    
T  44199138 ttaagtacagacatgactttgttacagatgtatttttttatatattcagacgggcagggatatcaatgaagaaggaggtgcctgtgaacttcgtgactga 44199039  T
Q  271 cccactagatagaagatcaacactcaggc 299  Q
    |||||||||||||||||||||||||||||    
T  44199038 cccactagatagaagatcaacactcaggc 44199010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 39582976 - 39583103
Alignment:
Q  183 catgattttgttagggatgtactttttgatata-ttatgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagata 281  Q
    ||||| ||||||||||||||| ||||| ||||| |||  | || |||| ||||||||||||||||||||  ||||||||| |||| ||||||||||||||    
T  39582976 catgactttgttagggatgtaattttttatatacttaataaggcgggagtatcagtgaagaaggaggcgtatgtgaactttctgattgacccactagata 39583075  T
Q  282 gaagatcaacactcaggcatgcagatgt 309  Q
    ||||||| ||||| |||||||| |||||    
T  39583076 gaagatcgacacttaggcatgcggatgt 39583103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 293
Target Start/End: Complemental strand, 7901197 - 7901101
Alignment:
Q  198 gatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacac 293  Q
    |||||||||||||||||||| | | ||| || | ||||  ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||    
T  7901197 gatgtactttttgatatatttaggcgggcggaagtatcgatgaagaaggagacgcctgtgaactttctgactgactcactagatagaagatcaacac 7901101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 13582816 - 13582758
Alignment:
Q  236 gtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactc 295  Q
    ||||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||    
T  13582816 gtgaagaaggaggcgtctgt-aacttcctgactgatccattagatagaagatcaacactc 13582758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 7501806 - 7501860
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaag 154  Q
    |||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||    
T  7501806 tgtttgtcgtaatgcgtgtctggatacttttggggagcatgcagttcattgtaag 7501860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 35236499 - 35236412
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtactttttgatata-ttatgagggtgggaatatcagtgaagaaggaggcgcctgtgaa 258  Q
    ||||| |||| ||||| ||||||| ||||||||||||| ||||| ||| | ||| |||| ||| ||||||||||||||||| ||||||    
T  35236499 ttaagcacatgcatgactttgttaaggatgtacttttttatatatttaggcgggcgggagtatgagtgaagaaggaggcgcatgtgaa 35236412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 37992648 - 37992557
Alignment:
Q  226 gggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgtgatgatgt 317  Q
    ||||||||||||||| |||||||  | ||||||||| || ||||||||||| ||||||||||  ||||| |||  || |||||| |||||||    
T  37992648 gggaatatcagtgaaaaaggagggtcatgtgaactttctcactgacccacttgatagaagatggacacttaggtctgtagatgttatgatgt 37992557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 38146404 - 38146303
Alignment:
Q  199 atgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcag 297  Q
    |||| |||||||||||||| | | |||  ||| ||| ||||||||| |||| || ||||||||| || ||||||| ||||||||||||||| ||||| ||    
T  38146404 atgtcctttttgatatatttaggtgggcaggagtataagtgaagaatgaggtgcttgtgaactttctcactgaccaactagatagaagatcgacacttag 38146305  T
Q  298 gc 299  Q
    ||    
T  38146304 gc 38146303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 22347318 - 22347113
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||||||||||||| |||||||||||||  || ||||||| ||||||||||||| |||||  |||||||||    ||| | |||| | |||||||||    
T  22347318 cctgtttgtcgtaaggcatgcctggatacttaaggggagcatgtcgttcattgtaaggagcttaccggctttaa----gtatagacataactttgttagg 22347223  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    |||||||||||||| || ||  || ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  22347222 gatgtactttttgacattttcagatgggcgggaatatcagtgaagaaggaggcacctgtgaactttctgactgacccactagatagaagatcaacactca 22347123  T
Q  297 ggcatgcaga 306  Q
    ||| ||||||    
T  22347122 ggcctgcaga 22347113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 34645007 - 34644799
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    |||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||  |||||| || ||||||    |||||  ||||| ||| |||||    
T  34645007 cctgtttgtcataaggcgtgtctggatacttttggcgagcatgtcgttcattgtaaagagcttcccgactttaa----gtacaggcatgactttattagg 34644912  T
Q  198 gatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    |||||||||||||||||||| | ||||| |||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||| ||||| |    
T  34644911 gatgtactttttgatatattcaggagggcgggagtatcagtgaagaaggaagcgcgtgtgaactttctgactgacccactagatagaagatcgacactta 34644812  T
Q  297 ggcatgcagatgt 309  Q
    || |||| |||||    
T  34644811 ggtatgcggatgt 34644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 98 - 309
Target Start/End: Original strand, 28040793 - 28041001
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    |||||||| ||||| | ||| ||| |||||||| | ||||||| ||||||||||||  || ||| ||| |||||    |||||||||||| |||||||||    
T  28040793 cctgtttgccgtaatgtgtgactgaatacttttagggagcatgtcgttcattgtaatgagtttcccggatttaa----gtacatacatgactttgttagg 28040888  T
Q  198 gatgtactttttgatatattatgagg-gtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||||| ||||||||||||  || | | | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  28040889 gatgtaccttttgatatatttagacgtgcgagaatatcagtgaagaaggaggcgtctgtgaacttcctgactaacccactagatagaagatcaacactca 28040988  T
Q  297 ggcatgcagatgt 309  Q
    ||| |||||||||    
T  28040989 ggcctgcagatgt 28041001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 115 - 298
Target Start/End: Complemental strand, 19035872 - 19035691
Alignment:
Q  115 gtgcctggatacttttggtg-agcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtactttttgata 213  Q
    |||||||||||||||||| | |||||| ||||||||||||| |||||| || ||||||    ||||| |||||| |||||||||||||||||||||||||    
T  19035872 gtgcctggatacttttgggggagcatgtcgttcattgtaaggagcttcccgactttaa----gtacagacatgaatttgttagggatgtactttttgata 19035777  T
Q  214 tattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcagg 298  Q
    || |  || ||||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  19035776 tactcagacgggtgagaatataagtgaagaaggaggtgcctgtgaacttcctgaccgacccactagataaaagatcaacactcagg 19035691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 126 - 309
Target Start/End: Original strand, 29169488 - 29169668
Alignment:
Q  126 cttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatgtactttttgatatattatga-ggg 224  Q
    ||||||| ||||||| ||||||||||||| | ||||||||||||||    ||||| ||| || ||||| ||||||||| |||||||||||||  || |||    
T  29169488 cttttggggagcatgtcgttcattgtaaggaacttctcggctttaa----gtacagacacgactttgtaagggatgtattttttgatatattcagacggg 29169583  T
Q  225 tgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
       || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  29169584 catgagtatcagtgaagaaggaggcgcctgtgaacttcctgactgacccgctagaaagaagatcaacactcaggcctgcggatgt 29169668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 287
Target Start/End: Original strand, 7794583 - 7794768
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatactttt-ggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggg 198  Q
    |||||||||||||||||| |||||||||||| || |||||||  ||||||||||| |||||| ||| ||||||    ||||| ||||| ||||| |||||    
T  7794583 tgtttgtcgtaaggcgtgtctggatactttttggggagcatgtagttcattgtaaaaagcttttcgactttaa----gtacaaacatggttttgctaggg 7794678  T
Q  199 atgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagat 287  Q
    |||| |||||||||| ||| | | ||| |||| ||||| |||||| |||||||| || | ||||||||||| |||||||||||| |||||    
T  7794679 atgtcctttttgataaattcaggcgggcgggagtatcattgaagagggaggcgcatgcgcacttcctgactaacccactagatataagat 7794768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 100 - 288
Target Start/End: Complemental strand, 38732022 - 38731834
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    ||||| |||||||| |||||||||||||||||   ||||| | |||||||||||| ||||||| ||||||||    ||||| | |||| |||||||||||    
T  38732022 tgtttttcgtaaggtgtgcctggatacttttgtgaagcatacagttcattgtaaggagcttcttggctttaa----gtacaaatatgactttgttaggga 38731927  T
Q  200 tgtactttttg---atatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatc 288  Q
    |||  |||||    ||||||| | |  ||||||| ||||||||||||||||||  ||| |||||||||| |||||||||||||||||||||||    
T  38731926 tgtcatttttttttatatatttaggcaggtgggagtatcagtgaagaaggaggtccctatgaacttccttactgacccactagatagaagatc 38731834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 309
Target Start/End: Original strand, 45659444 - 45659521
Alignment:
Q  228 gaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    |||||||||||||| ||||||||||||||||||||||| |    || ||||| |||||||||||||||||||||||| ||||    
T  45659444 gaatatcagtgaaggaggaggcgcctgtgaacttcctggc----ccgctagaaagaagatcaacactcaggcatgcacatgt 45659521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 35387114 - 35387199
Alignment:
Q  232 atcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgtgatgatgt 317  Q
    |||||||||||||||| | |||||||||||||| || ||| ||||| |||||||||| ||| | | |||||||||||| |||||||    
T  35387114 atcagtgaagaaggagacccctgtgaacttcctcacagactcactaaatagaagatctacagttaagcatgcagatgttatgatgt 35387199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 317
Target Start/End: Original strand, 37931971 - 37932100
Alignment:
Q  189 tttgttagggatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagat 287  Q
    |||||||||||| | ||||||||| |||| | | ||| |||| ||| ||||||||||||| ||| | ||||||| ||||| |||||| ||||||||| ||    
T  37931971 tttgttagggatatcctttttgatgtatttaggcgggcgggagtataagtgaagaaggagacgcttttgaactttctgaccgacccattagatagaaaat 37932070  T
Q  288 caacactcaggcatgcagatgtgatgatgt 317  Q
    | ||||| |||| ||| ||||| |||||||    
T  37932071 cgacacttaggcctgcggatgttatgatgt 37932100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 37200281 - 37200235
Alignment:
Q  241 gaaggaggcgcctgtgaacttcctgactgacccactagatagaagat 287  Q
    ||||||| ||||| ||||||| ||| |||||||||||||||||||||    
T  37200281 gaaggagacgcctatgaactttctgtctgacccactagatagaagat 37200235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 98 - 298
Target Start/End: Complemental strand, 24528031 - 24527834
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||| ||||||    ||||||||| |||||| ||||| |||    
T  24528031 cctgtttgtcgtaaggcgtacctggatacttttggggagcatgccgttcattgcaaggagcttttcggct----ttaagtacagacatgactttgtgagg 24527936  T
Q  198 gatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    ||||||||||||||||||||  ||  ||  |||||||||||||||||||||||| || |||||||||| |||| |||||||| | |||||||||||||||    
T  24527935 gatgtactttttgatatattcagactggcaggaatatcagtgaagaaggaggcgactatgaacttcctaactggcccactaggtcgaagatcaacactca 24527836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 97 - 317
Target Start/End: Original strand, 45613507 - 45613724
Alignment:
Q  97 tcctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttag 196  Q
    |||||||| | ||||| ||||  ||||||||||||| ||||||||||||||||||||| | |||| ||||||| |    ||||| ||| || ||||||||    
T  45613507 tcctgtttattgtaagacgtgtatggatacttttggggagcatgccgttcattgtaaggaacttcccggctttca----gtacagacacgactttgttag 45613602  T
Q  197 ggatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactc 295  Q
    |||||||||||||||||||||  || |||  ||| ||||||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||||||    
T  45613603 ggatgtactttttgatatattcagacgggcaggagtatcagtgaagaaggagacgtctgtgaacttcctgactgacccgctagaaagaagatcaacactc 45613702  T
Q  296 aggcatgcagatgtgatgatgt 317  Q
    |||| ||| ||||| |||||||    
T  45613703 aggcctgcggatgttatgatgt 45613724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 100 - 299
Target Start/End: Complemental strand, 4501697 - 4501501
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggga 199  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||| || ||    ||||||||| ||| || ||| |||||||    
T  4501697 tgtttgtcgtaaggcgtgcctggatacttttggggaccatgtcgttcattgtaaggagcttcccgact----ttaagtacacacacgactttattaggga 4501602  T
Q  200 tgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcagg 298  Q
    ||||||||||||||||||  ||  || |||| ||||| ||||||| |||| || |||||||||||||| |||||||||||||||||||| ||||||||||    
T  4501601 tgtactttttgatatattcagataggcgggagtatcaatgaagaaagaggtgcttgtgaacttcctgaatgacccactagatagaagataaacactcagg 4501502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 102 - 309
Target Start/End: Complemental strand, 19277729 - 19277526
Alignment:
Q  102 tttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatg 201  Q
    |||||||||||||||| |||||||||||||| ||||||| ||||||||||||| || ||  || ||||||      |||||||||| |||||||||||||    
T  19277729 tttgtcgtaaggcgtgtctggatacttttggggagcatgtcgttcattgtaagtagttttccgactttaag-----acatacatgactttgttagggatg 19277635  T
Q  202 tactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggca 300  Q
    | |||||| ||||| |  || |||  ||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||     
T  19277634 ttcttttttatatactcagacgggcaggaatatcagtgaagaaggaggcacctataaacttcctgactgacgcactagatagaagatcaacactcaggcc 19277535  T
Q  301 tgcagatgt 309  Q
    ||| |||||    
T  19277534 tgcggatgt 19277526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 309
Target Start/End: Original strand, 28516953 - 28517161
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagg 197  Q
    ||||||||||||||||| ||  |||||||||||    |||||| ||||||||||||| |||||||| |||||||    |||||  ||||| |||||||||    
T  28516953 cctgtttgtcgtaaggcatgtttggatacttttatgaagcatgtcgttcattgtaaggagcttctcagctttaa----gtacaagcatgactttgttagg 28517048  T
Q  198 gatgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactca 296  Q
    |||||||||||||||||||| | | | | ||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  28517049 gatgtactttttgatatattcaggcgagcgggagcatcggtgaagaaggaggcgcctgtgaactttctgactgacccactagatagaagatcgacactta 28517148  T
Q  297 ggcatgcagatgt 309  Q
    ||| |||| ||||    
T  28517149 ggcctgcaaatgt 28517161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 99 - 294
Target Start/End: Complemental strand, 47679564 - 47679373
Alignment:
Q  99 ctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttaggg 198  Q
    ||||||||||||||||| || ||||||||||||| ||||| | |||| ||||||||||||||| || ||||||    |||||| || || ||||||||||    
T  47679564 ctgtttgtcgtaaggcgcgcttggatacttttggggagcacgtcgtttattgtaagaagcttcccgactttaa----gtacat-cacgactttgttaggg 47679470  T
Q  199 atgtactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacact 294  Q
    ||||||||||||||||||| | | ||| |||  ||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||| |||||    
T  47679469 atgtactttttgatatattcaggcgggcgggggtatcagtgaagaaggagtcgcgtgtgaactttctgactgacgcactagatagaagatcgacact 47679373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 309
Target Start/End: Complemental strand, 3676994 - 3676873
Alignment:
Q  189 tttgttagggatgtactttttgatatattatga-gggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagat 287  Q
    |||||| | ||||||||||||||||||||  || ||| |||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||| ||    
T  3676994 tttgtttgagatgtactttttgatatattcagacgggcgggaatatcaatgaagaaggaggcacctgtgaacttcctgactgacccaatagatagaaaat 3676895  T
Q  288 caacactcaggcatgcagatgt 309  Q
    |||||||||||| || ||||||    
T  3676894 caacactcaggcttgtagatgt 3676873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 309
Target Start/End: Complemental strand, 10905540 - 10905336
Alignment:
Q  102 tttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatg 201  Q
    ||||||||||||| ||||||||||||||||| |||||||  |||||||||||| |||||||||| |    ||||||| |   |||| ||| ||||| |||    
T  10905540 tttgtcgtaaggcttgcctggatacttttggggagcatgttgttcattgtaaggagcttctcgggt----ttaagtataagtatgagttttttaggaatg 10905445  T
Q  202 tactttttgatatat-tatgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggca 300  Q
    |||||||||||||||  | || || |||| |||||||||||||||||| |||| ||||||| ||   ||| |||||||||| |||||| ||||| ||||     
T  10905444 tactttttgatatatccaggaaggcgggagtatcagtgaagaaggaggagcctatgaactttcttgttgatccactagatataagatcgacacttaggcc 10905345  T
Q  301 tgcagatgt 309  Q
    |||||||||    
T  10905344 tgcagatgt 10905336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 983320 - 983190
Alignment:
Q  172 ttaagtacatacatgattttgttagggatgtactttttgatatattatgagggt-gggaatatcagtgaagaaggaggcgcctgtgaacttcctgactga 270  Q
    ||||||||| || ||| |||||||||||| ||||||| ||||||||  ||  |  |||| |||||||||||||||||||| | ||||||||||| |||||    
T  983320 ttaagtacagacctgactttgttagggatttacttttagatatattcagactgacgggattatcagtgaagaaggaggcgtcggtgaacttcctaactga 983221  T
Q  271 cccactagatagaagatcaacactcaggcat 301  Q
    |||||||||||||||||||||||||||||||    
T  983220 cccactagatagaagatcaacactcaggcat 983190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 102 - 304
Target Start/End: Complemental strand, 32585584 - 32585385
Alignment:
Q  102 tttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatg 201  Q
    ||||||||||||| || |||||||||||||| ||||||| ||||||| ||||| ||||||||| ||    |||||||||  ||||| |||||||||| ||    
T  32585584 tttgtcgtaaggcatgtctggatacttttggggagcatgtcgttcatggtaaggagcttctcgact----ttaagtacaggcatgactttgttaggggtg 32585489  T
Q  202 tactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggca 300  Q
    | | |||||||||||| | | |||  ||| ||| ||||||||||||||||| ||||||||| |||| ||||| |||||||| |||||  ||||| ||||     
T  32585488 tgccttttgatatattcaggtgggcaggagtataagtgaagaaggaggcgcatgtgaactttctgaatgacctactagataaaagattgacacttaggcc 32585389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 43857174 - 43857107
Alignment:
Q  241 gaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    ||||||||| |||||||  ||| || |||||||||||||||||||||||||||| |||| |||||||||    
T  43857174 gaaggaggc-cctgtgagtttcttggctgacccactagatagaagatcaacacttaggcctgcagatgt 43857107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 5827695 - 5827652
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgc 141  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  5827695 cctgtttgtcgtaaggcgtgtctggatacttttggggagcatgc 5827652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 4175653 - 4175580
Alignment:
Q  98 cctgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaa 171  Q
    ||||||| || ||||||||||||  ||||||||||  ||||||| ||| |||||||| ||||||||| ||||||    
T  4175653 cctgtttttcctaaggcgtgcctaaatacttttgggtagcatgcagtttattgtaaggagcttctcgactttaa 4175580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 43857303 - 43857250
Alignment:
Q  100 tgtttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaag 154  Q
    |||||||||||||| ||| || ||||||||||| |||||||| ||||||||||||    
T  43857303 tgtttgtcgtaaggtgtgtctagatacttttgg-gagcatgcagttcattgtaag 43857250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 5825561 - 5825520
Alignment:
Q  252 ctgtgaacttcctgactgacccactagatagaagatcaacac 293  Q
    |||||||||| |||| ||||||||||||||||||||| ||||    
T  5825561 ctgtgaactttctgattgacccactagatagaagatcgacac 5825520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 102 - 294
Target Start/End: Complemental strand, 20158 - 19969
Alignment:
Q  102 tttgtcgtaaggcgtgcctggatacttttggtgagcatgccgttcattgtaagaagcttctcggctttaattaagtacatacatgattttgttagggatg 201  Q
    |||||| ||||||||||||||||||| |||| |||||| | |||||||||||| ||||||   ||| |||    |||||||| ||| ||||||||| |||    
T  20158 tttgtcataaggcgtgcctggatactattggggagcatacagttcattgtaaggagcttcctagctataa----gtacatacttgactttgttaggaatg 20063  T
Q  202 tactttttgatatatt-atgagggtgggaatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacact 294  Q
    | |||||||||||||| | |||||||  | |||||||||||||||||||  || |||||||| | |||||||||||||||||||||| ||||||    
T  20062 tcctttttgatatattcaggagggtgaaagtatcagtgaagaaggaggcctctctgaacttcttaactgacccactagatagaagatgaacact 19969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 33563 - 33484
Alignment:
Q  229 aatatcagtgaagaaggaggcgcctgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgt 309  Q
    |||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| |||||    
T  33563 aatatcagtgaagaaggaggcgcctgtgaacttcttgactg-cctactagatagaagatcaacactcaggcatgcggatgt 33484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 2 - 66
Alignment:
Q  253 tgtgaacttcctgactgacccactagatagaagatcaacactcaggcatgcagatgtgatgatgt 317  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||  || ||||| |||||||    
T  2 tgtgaacttcctgactgacccactagatagatgatcaacacgcaggcccgcggatgttatgatgt 66  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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