View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0845_low_27 (Length: 329)

Name: NF0845_low_27
Description: NF0845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0845_low_27
NF0845_low_27
[»] chr7 (4 HSPs)
chr7 (87-329)||(18924424-18924666)
chr7 (233-305)||(34730449-34730521)
chr7 (234-305)||(34727292-34727363)
chr7 (233-305)||(34735048-34735120)
[»] chr4 (1 HSPs)
chr4 (117-178)||(7888202-7888263)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 87 - 329
Target Start/End: Complemental strand, 18924666 - 18924424
Alignment:
Q  87 acatcatcctggtccatcccacataagtttaaagctatatcaagaaacatattttccacatcacgatcacttaaaccattaaaacttattcttataatct 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  18924666 acatcatcctggtccatcccacataagtttaaagctatatcaagaaacatattttccacatcaccatcacgtaaaccatgaaaacttattcttataatct 18924567  T
Q  187 ctctgactctggcatgacttgagggatgcactttggtaatgtattggagtttctctaatacactgttccactctgttttccttctcgtagtcaacaaaaa 286  Q
    ||  |||||||||||||||| || ||| || | || |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18924566 cttggactctggcatgacttaagtgatacattctgttaatttgttggagtttctctaatacactgttccactctgttttccttctcgtagtcaacaaaaa 18924467  T
Q  287 ggacccaatgacttcaagacttaacggcaatccatgacagttc 329  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18924466 ggacccaatgacttcaagacttaacggcaatccatgacagttc 18924424  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 34730449 - 34730521
Alignment:
Q  233 gagtttctctaatacactgttccactctgttttccttctcgtagtcaacaaaaaggacccaatgacttcaaga 305  Q
    ||||||||| |||| ||| ||||||||| |||| |||| | ||||||||||||||||||||||||||||||||    
T  34730449 gagtttctccaatatactcttccactcttttttgcttcgcctagtcaacaaaaaggacccaatgacttcaaga 34730521  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 34727292 - 34727363
Alignment:
Q  234 agtttctctaatacactgttccactctgttttccttctcgtagtcaacaaaaaggacccaatgacttcaaga 305  Q
    |||||||| |||||||| ||||||||| ||||||||| | | ||||||||||||||||||||||||| ||||    
T  34727292 agtttctccaatacactcttccactcttttttccttcgcctggtcaacaaaaaggacccaatgacttgaaga 34727363  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 34735048 - 34735120
Alignment:
Q  233 gagtttctctaatacactgttccactctgttttccttctcgtagtcaacaaaaaggacccaatgacttcaaga 305  Q
    ||||||||| |||||||  |||||| || |||| |||| | | ||||||||||||||||||||||||| ||||    
T  34735048 gagtttctccaatacacgcttccacactttttttcttcgcctggtcaacaaaaaggacccaatgacttgaaga 34735120  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 7888202 - 7888263
Alignment:
Q  117 aaagctatatcaagaaacatattttccacatcacgatcacttaaaccattaaaacttattct 178  Q
    ||||| |||||||| || |||| || |||||||  |||||||||||||| ||||||||||||    
T  7888202 aaagcaatatcaaggaatatatctttcacatcatcatcacttaaaccatcaaaacttattct 7888263  T

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